Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02995 and HMPREF1058_RS02990 are separated by 36 nucleotides HMPREF1058_RS02990 and HMPREF1058_RS02985 are separated by 4 nucleotides
HMPREF1058_RS02995: HMPREF1058_RS02995 - peptidylprolyl isomerase, at 36,052 to 37,389
_RS02995
HMPREF1058_RS02990: HMPREF1058_RS02990 - peptidyl-prolyl cis-trans isomerase, at 37,426 to 38,298
_RS02990
HMPREF1058_RS02985: HMPREF1058_RS02985 - peptidylprolyl isomerase, at 38,303 to 39,661
_RS02985
Position (kb) 37
38
39 Strain fitness (log2 ratio) -2
-1
0
1
2 at 36.439 kb on + strand, within HMPREF1058_RS02995 at 36.503 kb on - strand, within HMPREF1058_RS02995 at 36.684 kb on + strand, within HMPREF1058_RS02995 at 36.697 kb on - strand, within HMPREF1058_RS02995 at 36.697 kb on - strand, within HMPREF1058_RS02995 at 36.697 kb on - strand, within HMPREF1058_RS02995 at 36.786 kb on + strand, within HMPREF1058_RS02995 at 36.786 kb on + strand, within HMPREF1058_RS02995 at 36.787 kb on - strand, within HMPREF1058_RS02995 at 36.953 kb on - strand, within HMPREF1058_RS02995 at 36.953 kb on - strand, within HMPREF1058_RS02995 at 37.070 kb on + strand, within HMPREF1058_RS02995 at 37.071 kb on - strand, within HMPREF1058_RS02995 at 37.075 kb on - strand, within HMPREF1058_RS02995 at 37.075 kb on - strand, within HMPREF1058_RS02995 at 37.147 kb on + strand, within HMPREF1058_RS02995 at 37.149 kb on + strand, within HMPREF1058_RS02995 at 37.200 kb on - strand, within HMPREF1058_RS02995 at 37.330 kb on + strand at 37.332 kb on + strand at 37.371 kb on + strand at 37.391 kb on + strand at 37.425 kb on + strand at 37.463 kb on + strand at 37.540 kb on + strand, within HMPREF1058_RS02990 at 37.540 kb on + strand, within HMPREF1058_RS02990 at 37.546 kb on + strand, within HMPREF1058_RS02990 at 37.548 kb on + strand, within HMPREF1058_RS02990 at 37.618 kb on + strand, within HMPREF1058_RS02990 at 37.734 kb on + strand, within HMPREF1058_RS02990 at 37.734 kb on + strand, within HMPREF1058_RS02990 at 37.778 kb on + strand, within HMPREF1058_RS02990 at 37.830 kb on + strand, within HMPREF1058_RS02990 at 37.932 kb on + strand, within HMPREF1058_RS02990 at 37.981 kb on + strand, within HMPREF1058_RS02990 at 38.087 kb on + strand, within HMPREF1058_RS02990 at 38.220 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 36,439 + HMPREF1058_RS02995 0.29 +0.0 36,503 - HMPREF1058_RS02995 0.34 -0.4 36,684 + HMPREF1058_RS02995 0.47 +0.9 36,697 - HMPREF1058_RS02995 0.48 +1.0 36,697 - HMPREF1058_RS02995 0.48 -0.3 36,697 - HMPREF1058_RS02995 0.48 +0.7 36,786 + HMPREF1058_RS02995 0.55 +1.1 36,786 + HMPREF1058_RS02995 0.55 +0.6 36,787 - HMPREF1058_RS02995 0.55 +0.5 36,953 - HMPREF1058_RS02995 0.67 -0.9 36,953 - HMPREF1058_RS02995 0.67 +0.0 37,070 + HMPREF1058_RS02995 0.76 +1.1 37,071 - HMPREF1058_RS02995 0.76 +1.6 37,075 - HMPREF1058_RS02995 0.76 -0.9 37,075 - HMPREF1058_RS02995 0.76 +1.7 37,147 + HMPREF1058_RS02995 0.82 +0.7 37,149 + HMPREF1058_RS02995 0.82 +0.4 37,200 - HMPREF1058_RS02995 0.86 -0.3 37,330 + +0.2 37,332 + +2.0 37,371 + +0.3 37,391 + +0.3 37,425 + +0.0 37,463 + -0.6 37,540 + HMPREF1058_RS02990 0.13 -2.1 37,540 + HMPREF1058_RS02990 0.13 -0.7 37,546 + HMPREF1058_RS02990 0.14 -1.2 37,548 + HMPREF1058_RS02990 0.14 -1.5 37,618 + HMPREF1058_RS02990 0.22 -0.4 37,734 + HMPREF1058_RS02990 0.35 +0.2 37,734 + HMPREF1058_RS02990 0.35 +0.4 37,778 + HMPREF1058_RS02990 0.40 -1.1 37,830 + HMPREF1058_RS02990 0.46 -2.0 37,932 + HMPREF1058_RS02990 0.58 +1.6 37,981 + HMPREF1058_RS02990 0.64 -1.1 38,087 + HMPREF1058_RS02990 0.76 +0.2 38,220 + -0.3
Or see this region's nucleotide sequence