Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02750

Experiment: pectate 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pectate 2.5 mg/ml (C)
105,590	+		HMPREF1058_RS02755	0.80	+1.0
105,643	-		HMPREF1058_RS02755	0.81	-2.2
106,060	-				-0.3
106,424	-				+0.4
106,493	+				-0.3
106,493	+				-1.5
106,539	+				-0.3
106,539	+				-0.5
106,551	+				-0.7
106,552	-				+0.7
106,591	+				+2.0
106,620	+				+1.0
106,622	+				+0.0
106,721	-				+0.0
106,860	-				+2.0
106,860	-		HMPREF1058_RS02750	0.15	-0.8
107,082	-		HMPREF1058_RS02750	0.24	+2.0
107,297	+		HMPREF1058_RS02750	0.34	-0.3
107,299	+		HMPREF1058_RS02750	0.34	-2.3
107,309	-		HMPREF1058_RS02750	0.34	-1.0
107,309	-		HMPREF1058_RS02750	0.34	-0.3
107,309	-		HMPREF1058_RS02750	0.34	-0.6
107,319	-		HMPREF1058_RS02750	0.35	-1.0
107,386	+		HMPREF1058_RS02750	0.37	-0.6
107,546	-		HMPREF1058_RS02750	0.44	+0.4
107,564	-		HMPREF1058_RS02750	0.45	+1.0
107,604	-		HMPREF1058_RS02750	0.47	-0.6
108,035	-		HMPREF1058_RS02750	0.65	+2.0
108,037	+		HMPREF1058_RS02750	0.65	+1.0
108,037	+		HMPREF1058_RS02750	0.65	+2.0
108,037	+		HMPREF1058_RS02750	0.65	+0.4
108,121	+		HMPREF1058_RS02750	0.69	+2.0
108,122	-		HMPREF1058_RS02750	0.69	-0.8
108,128	-		HMPREF1058_RS02750	0.69	+1.0
108,216	-		HMPREF1058_RS02750	0.73	+1.0
108,369	-		HMPREF1058_RS02750	0.79	-1.0
108,501	-		HMPREF1058_RS02750	0.85	+1.0
108,646	-				+0.0
108,800	+				-2.0
108,806	-				+1.4
108,812	-				-1.5
108,860	+				+1.2
108,861	-				-0.4
108,866	+				-0.1