Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01935 and HMPREF1058_RS01930 are separated by 166 nucleotides HMPREF1058_RS01930 and HMPREF1058_RS01925 are separated by 4 nucleotides HMPREF1058_RS01925 and HMPREF1058_RS01920 are separated by 174 nucleotides HMPREF1058_RS01920 and HMPREF1058_RS01915 are separated by 4 nucleotides
HMPREF1058_RS01935: HMPREF1058_RS01935 - phage portal protein, at 11,482 to 12,975
_RS01935
HMPREF1058_RS01930: HMPREF1058_RS01930 - type II toxin-antitoxin system HigB family toxin, at 13,142 to 13,435
_RS01930
HMPREF1058_RS01925: HMPREF1058_RS01925 - helix-turn-helix domain-containing protein, at 13,440 to 13,805
_RS01925
HMPREF1058_RS01920: HMPREF1058_RS01920 - hypothetical protein, at 13,980 to 14,615
_RS01920
HMPREF1058_RS01915: HMPREF1058_RS01915 - hypothetical protein, at 14,620 to 15,471
_RS01915
Position (kb) 13
14 Strain fitness (log2 ratio) -1
0
1 at 12.543 kb on + strand, within HMPREF1058_RS01935 at 12.619 kb on - strand, within HMPREF1058_RS01935 at 12.637 kb on - strand, within HMPREF1058_RS01935 at 12.637 kb on - strand, within HMPREF1058_RS01935 at 12.736 kb on - strand, within HMPREF1058_RS01935 at 12.784 kb on - strand, within HMPREF1058_RS01935 at 12.784 kb on - strand, within HMPREF1058_RS01935 at 12.804 kb on + strand, within HMPREF1058_RS01935 at 13.007 kb on - strand at 13.007 kb on - strand at 13.112 kb on + strand at 13.112 kb on + strand at 13.149 kb on + strand at 13.175 kb on + strand, within HMPREF1058_RS01930 at 13.264 kb on + strand, within HMPREF1058_RS01930 at 13.293 kb on + strand, within HMPREF1058_RS01930 at 13.293 kb on + strand, within HMPREF1058_RS01930 at 13.330 kb on + strand, within HMPREF1058_RS01930 at 13.334 kb on + strand, within HMPREF1058_RS01930 at 13.344 kb on + strand at 13.376 kb on + strand, within HMPREF1058_RS01930 at 13.640 kb on + strand, within HMPREF1058_RS01925 at 13.640 kb on + strand, within HMPREF1058_RS01925 at 13.803 kb on + strand at 13.807 kb on + strand at 13.808 kb on - strand at 13.808 kb on - strand at 13.907 kb on - strand at 13.947 kb on - strand at 13.980 kb on - strand at 13.991 kb on - strand at 14.146 kb on - strand, within HMPREF1058_RS01920 at 14.194 kb on - strand, within HMPREF1058_RS01920 at 14.265 kb on - strand, within HMPREF1058_RS01920 at 14.398 kb on - strand, within HMPREF1058_RS01920 at 14.711 kb on - strand, within HMPREF1058_RS01915 at 14.747 kb on - strand, within HMPREF1058_RS01915
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 12,543 + HMPREF1058_RS01935 0.71 -0.7 12,619 - HMPREF1058_RS01935 0.76 -0.4 12,637 - HMPREF1058_RS01935 0.77 -0.4 12,637 - HMPREF1058_RS01935 0.77 +1.0 12,736 - HMPREF1058_RS01935 0.84 +1.4 12,784 - HMPREF1058_RS01935 0.87 +0.2 12,784 - HMPREF1058_RS01935 0.87 +0.2 12,804 + HMPREF1058_RS01935 0.88 -0.0 13,007 - -0.5 13,007 - -0.6 13,112 + +0.1 13,112 + +1.2 13,149 + +0.2 13,175 + HMPREF1058_RS01930 0.11 +0.4 13,264 + HMPREF1058_RS01930 0.41 -0.0 13,293 + HMPREF1058_RS01930 0.51 +0.3 13,293 + HMPREF1058_RS01930 0.51 +0.3 13,330 + HMPREF1058_RS01930 0.64 +0.2 13,334 + HMPREF1058_RS01930 0.65 +0.3 13,344 + +0.1 13,376 + HMPREF1058_RS01930 0.80 -0.2 13,640 + HMPREF1058_RS01925 0.55 -1.3 13,640 + HMPREF1058_RS01925 0.55 -0.5 13,803 + +0.2 13,807 + -0.2 13,808 - -0.1 13,808 - -0.7 13,907 - +0.5 13,947 - -0.2 13,980 - +0.1 13,991 - +0.9 14,146 - HMPREF1058_RS01920 0.26 -0.7 14,194 - HMPREF1058_RS01920 0.34 -0.9 14,265 - HMPREF1058_RS01920 0.45 -1.6 14,398 - HMPREF1058_RS01920 0.66 +0.5 14,711 - HMPREF1058_RS01915 0.11 +0.1 14,747 - HMPREF1058_RS01915 0.15 +0.5
Or see this region's nucleotide sequence