Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01815 and HMPREF1058_RS01810 are separated by 162 nucleotides HMPREF1058_RS01810 and HMPREF1058_RS01805 are separated by 62 nucleotides HMPREF1058_RS01805 and HMPREF1058_RS01800 overlap by 4 nucleotides HMPREF1058_RS01800 and HMPREF1058_RS01795 are separated by 4 nucleotides
HMPREF1058_RS01815: HMPREF1058_RS01815 - phage integrase SAM-like domain-containing protein, at 36,723 to 37,964
_RS01815
HMPREF1058_RS01810: HMPREF1058_RS01810 - tRNA-Ala, at 38,127 to 38,200
_RS01810
HMPREF1058_RS01805: HMPREF1058_RS01805 - DUF4286 family protein, at 38,263 to 38,568
_RS01805
HMPREF1058_RS01800: HMPREF1058_RS01800 - crossover junction endodeoxyribonuclease RuvC, at 38,565 to 39,134
_RS01800
HMPREF1058_RS01795: HMPREF1058_RS01795 - type I pullulanase, at 39,139 to 41,133
_RS01795
Position (kb) 38
39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 37.588 kb on - strand, within HMPREF1058_RS01815 at 37.636 kb on - strand, within HMPREF1058_RS01815 at 37.665 kb on + strand, within HMPREF1058_RS01815 at 37.697 kb on + strand, within HMPREF1058_RS01815 at 37.697 kb on + strand, within HMPREF1058_RS01815 at 37.697 kb on + strand, within HMPREF1058_RS01815 at 37.697 kb on + strand, within HMPREF1058_RS01815 at 37.698 kb on - strand, within HMPREF1058_RS01815 at 37.698 kb on - strand, within HMPREF1058_RS01815 at 37.718 kb on + strand, within HMPREF1058_RS01815 at 37.767 kb on + strand, within HMPREF1058_RS01815 at 37.774 kb on - strand, within HMPREF1058_RS01815 at 37.785 kb on + strand, within HMPREF1058_RS01815 at 37.786 kb on - strand, within HMPREF1058_RS01815 at 37.830 kb on + strand, within HMPREF1058_RS01815 at 37.831 kb on - strand, within HMPREF1058_RS01815 at 37.831 kb on - strand, within HMPREF1058_RS01815 at 37.849 kb on + strand at 37.849 kb on + strand at 37.849 kb on + strand at 37.849 kb on + strand at 37.871 kb on + strand at 37.920 kb on + strand at 37.948 kb on + strand at 37.972 kb on + strand at 37.977 kb on - strand at 37.988 kb on - strand at 38.213 kb on + strand at 38.249 kb on + strand at 38.259 kb on - strand at 38.262 kb on + strand at 38.262 kb on + strand at 38.338 kb on + strand, within HMPREF1058_RS01805 at 38.338 kb on + strand, within HMPREF1058_RS01805 at 38.339 kb on - strand, within HMPREF1058_RS01805 at 38.398 kb on - strand, within HMPREF1058_RS01805 at 38.451 kb on + strand, within HMPREF1058_RS01805 at 38.452 kb on - strand, within HMPREF1058_RS01805 at 38.516 kb on + strand, within HMPREF1058_RS01805 at 38.645 kb on - strand, within HMPREF1058_RS01800 at 38.693 kb on + strand, within HMPREF1058_RS01800 at 38.713 kb on + strand, within HMPREF1058_RS01800 at 38.747 kb on + strand, within HMPREF1058_RS01800 at 38.761 kb on - strand, within HMPREF1058_RS01800 at 38.761 kb on - strand, within HMPREF1058_RS01800 at 38.761 kb on - strand, within HMPREF1058_RS01800 at 38.880 kb on - strand, within HMPREF1058_RS01800 at 38.890 kb on - strand, within HMPREF1058_RS01800 at 38.975 kb on - strand, within HMPREF1058_RS01800 at 38.979 kb on - strand, within HMPREF1058_RS01800 at 39.045 kb on + strand, within HMPREF1058_RS01800 at 39.082 kb on - strand at 39.107 kb on + strand at 39.125 kb on - strand at 39.138 kb on + strand at 39.157 kb on - strand at 39.180 kb on + strand at 39.183 kb on + strand at 39.183 kb on + strand at 39.184 kb on - strand at 39.184 kb on - strand at 39.360 kb on + strand, within HMPREF1058_RS01795 at 39.402 kb on + strand, within HMPREF1058_RS01795 at 39.437 kb on - strand, within HMPREF1058_RS01795 at 39.455 kb on + strand, within HMPREF1058_RS01795 at 39.489 kb on + strand, within HMPREF1058_RS01795 at 39.516 kb on + strand, within HMPREF1058_RS01795 at 39.595 kb on + strand, within HMPREF1058_RS01795 at 39.667 kb on - strand, within HMPREF1058_RS01795 at 39.700 kb on - strand, within HMPREF1058_RS01795 at 39.730 kb on - strand, within HMPREF1058_RS01795 at 39.782 kb on - strand, within HMPREF1058_RS01795 at 39.826 kb on + strand, within HMPREF1058_RS01795 at 39.826 kb on + strand, within HMPREF1058_RS01795 at 39.828 kb on + strand, within HMPREF1058_RS01795 at 39.829 kb on - strand, within HMPREF1058_RS01795 at 39.889 kb on + strand, within HMPREF1058_RS01795 at 39.976 kb on + strand, within HMPREF1058_RS01795 at 39.977 kb on - strand, within HMPREF1058_RS01795 at 40.017 kb on + strand, within HMPREF1058_RS01795 at 40.120 kb on + strand, within HMPREF1058_RS01795 at 40.122 kb on + strand, within HMPREF1058_RS01795 at 40.123 kb on - strand, within HMPREF1058_RS01795 at 40.123 kb on - strand, within HMPREF1058_RS01795 at 40.127 kb on + strand, within HMPREF1058_RS01795 at 40.128 kb on - strand, within HMPREF1058_RS01795 at 40.128 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 37,588 - HMPREF1058_RS01815 0.70 -0.5 37,636 - HMPREF1058_RS01815 0.74 +0.8 37,665 + HMPREF1058_RS01815 0.76 -0.2 37,697 + HMPREF1058_RS01815 0.78 -0.2 37,697 + HMPREF1058_RS01815 0.78 -0.0 37,697 + HMPREF1058_RS01815 0.78 -0.2 37,697 + HMPREF1058_RS01815 0.78 -0.4 37,698 - HMPREF1058_RS01815 0.79 -0.8 37,698 - HMPREF1058_RS01815 0.79 +0.5 37,718 + HMPREF1058_RS01815 0.80 +0.1 37,767 + HMPREF1058_RS01815 0.84 +1.4 37,774 - HMPREF1058_RS01815 0.85 -1.2 37,785 + HMPREF1058_RS01815 0.86 -0.7 37,786 - HMPREF1058_RS01815 0.86 -0.4 37,830 + HMPREF1058_RS01815 0.89 +1.4 37,831 - HMPREF1058_RS01815 0.89 +0.0 37,831 - HMPREF1058_RS01815 0.89 -0.5 37,849 + +0.5 37,849 + -1.7 37,849 + -0.0 37,849 + +1.1 37,871 + +0.7 37,920 + +0.3 37,948 + +0.9 37,972 + -0.4 37,977 - +0.2 37,988 - +0.0 38,213 + -0.2 38,249 + +0.9 38,259 - -2.1 38,262 + +2.1 38,262 + +0.5 38,338 + HMPREF1058_RS01805 0.25 +1.1 38,338 + HMPREF1058_RS01805 0.25 +0.3 38,339 - HMPREF1058_RS01805 0.25 -0.4 38,398 - HMPREF1058_RS01805 0.44 -1.4 38,451 + HMPREF1058_RS01805 0.61 +0.5 38,452 - HMPREF1058_RS01805 0.62 -1.5 38,516 + HMPREF1058_RS01805 0.83 -0.1 38,645 - HMPREF1058_RS01800 0.14 -0.8 38,693 + HMPREF1058_RS01800 0.22 -1.1 38,713 + HMPREF1058_RS01800 0.26 -0.9 38,747 + HMPREF1058_RS01800 0.32 -2.4 38,761 - HMPREF1058_RS01800 0.34 +0.3 38,761 - HMPREF1058_RS01800 0.34 -1.5 38,761 - HMPREF1058_RS01800 0.34 -2.1 38,880 - HMPREF1058_RS01800 0.55 -0.6 38,890 - HMPREF1058_RS01800 0.57 -2.2 38,975 - HMPREF1058_RS01800 0.72 +1.3 38,979 - HMPREF1058_RS01800 0.73 +0.8 39,045 + HMPREF1058_RS01800 0.84 -2.8 39,082 - -0.4 39,107 + +1.8 39,125 - -1.3 39,138 + +0.6 39,157 - +1.9 39,180 + +1.2 39,183 + +1.1 39,183 + +1.2 39,184 - +0.1 39,184 - -0.7 39,360 + HMPREF1058_RS01795 0.11 +0.1 39,402 + HMPREF1058_RS01795 0.13 +0.1 39,437 - HMPREF1058_RS01795 0.15 -1.8 39,455 + HMPREF1058_RS01795 0.16 -0.1 39,489 + HMPREF1058_RS01795 0.18 +0.1 39,516 + HMPREF1058_RS01795 0.19 -0.5 39,595 + HMPREF1058_RS01795 0.23 +0.5 39,667 - HMPREF1058_RS01795 0.26 -0.2 39,700 - HMPREF1058_RS01795 0.28 -0.7 39,730 - HMPREF1058_RS01795 0.30 -0.4 39,782 - HMPREF1058_RS01795 0.32 +2.1 39,826 + HMPREF1058_RS01795 0.34 +0.1 39,826 + HMPREF1058_RS01795 0.34 +1.0 39,828 + HMPREF1058_RS01795 0.35 +0.2 39,829 - HMPREF1058_RS01795 0.35 -0.4 39,889 + HMPREF1058_RS01795 0.38 -0.5 39,976 + HMPREF1058_RS01795 0.42 -0.2 39,977 - HMPREF1058_RS01795 0.42 -0.7 40,017 + HMPREF1058_RS01795 0.44 -0.3 40,120 + HMPREF1058_RS01795 0.49 +1.6 40,122 + HMPREF1058_RS01795 0.49 +0.4 40,123 - HMPREF1058_RS01795 0.49 +1.1 40,123 - HMPREF1058_RS01795 0.49 -0.0 40,127 + HMPREF1058_RS01795 0.50 -0.3 40,128 - HMPREF1058_RS01795 0.50 -0.5 40,128 - +0.6
Or see this region's nucleotide sequence