Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS01405

Experiment: pectate 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS01410 and HMPREF1058_RS01405 are separated by 235 nucleotidesHMPREF1058_RS01405 and HMPREF1058_RS01400 overlap by 4 nucleotidesHMPREF1058_RS01400 and HMPREF1058_RS01395 overlap by 1 nucleotides HMPREF1058_RS01410: HMPREF1058_RS01410 - putative transporter, at 134,942 to 136,630 _RS01410 HMPREF1058_RS01405: HMPREF1058_RS01405 - cobyrinate a,c-diamide synthase, at 136,866 to 138,194 _RS01405 HMPREF1058_RS01400: HMPREF1058_RS01400 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 138,191 to 138,766 _RS01400 HMPREF1058_RS01395: HMPREF1058_RS01395 - cobyric acid synthase, at 138,766 to 140,256 _RS01395 Position (kb) 136 137 138 139Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 135.917 kb on + strand, within HMPREF1058_RS01410at 135.938 kb on + strand, within HMPREF1058_RS01410at 136.137 kb on - strand, within HMPREF1058_RS01410at 136.152 kb on - strand, within HMPREF1058_RS01410at 136.154 kb on - strand, within HMPREF1058_RS01410at 136.268 kb on + strand, within HMPREF1058_RS01410at 136.269 kb on - strand, within HMPREF1058_RS01410at 136.270 kb on + strand, within HMPREF1058_RS01410at 136.271 kb on - strand, within HMPREF1058_RS01410at 136.370 kb on + strand, within HMPREF1058_RS01410at 136.391 kb on + strand, within HMPREF1058_RS01410at 136.391 kb on + strand, within HMPREF1058_RS01410at 136.392 kb on - strand, within HMPREF1058_RS01410at 136.460 kb on + strand, within HMPREF1058_RS01410at 136.595 kb on - strandat 136.643 kb on - strandat 136.658 kb on - strandat 136.661 kb on - strandat 136.680 kb on + strandat 136.680 kb on + strandat 136.681 kb on - strandat 136.681 kb on - strandat 136.724 kb on + strandat 136.746 kb on + strandat 136.767 kb on + strandat 136.768 kb on - strandat 136.774 kb on + strandat 136.785 kb on + strandat 136.857 kb on + strandat 136.923 kb on - strandat 137.000 kb on + strand, within HMPREF1058_RS01405at 137.091 kb on - strand, within HMPREF1058_RS01405at 137.171 kb on + strand, within HMPREF1058_RS01405at 137.213 kb on + strand, within HMPREF1058_RS01405at 137.216 kb on - strand, within HMPREF1058_RS01405at 137.216 kb on - strand, within HMPREF1058_RS01405at 137.218 kb on + strand, within HMPREF1058_RS01405at 137.231 kb on + strand, within HMPREF1058_RS01405at 137.232 kb on - strand, within HMPREF1058_RS01405at 137.538 kb on - strand, within HMPREF1058_RS01405at 137.555 kb on + strand, within HMPREF1058_RS01405at 137.651 kb on + strand, within HMPREF1058_RS01405at 137.655 kb on + strand, within HMPREF1058_RS01405at 137.656 kb on - strand, within HMPREF1058_RS01405at 137.656 kb on - strand, within HMPREF1058_RS01405at 137.657 kb on + strand, within HMPREF1058_RS01405at 137.658 kb on - strand, within HMPREF1058_RS01405at 137.669 kb on - strand, within HMPREF1058_RS01405at 137.697 kb on - strand, within HMPREF1058_RS01405at 137.697 kb on - strand, within HMPREF1058_RS01405at 137.714 kb on - strand, within HMPREF1058_RS01405at 137.715 kb on + strand, within HMPREF1058_RS01405at 137.748 kb on + strand, within HMPREF1058_RS01405at 137.789 kb on - strand, within HMPREF1058_RS01405at 137.826 kb on + strand, within HMPREF1058_RS01405at 137.974 kb on + strand, within HMPREF1058_RS01405at 137.975 kb on - strand, within HMPREF1058_RS01405at 138.116 kb on + strandat 138.116 kb on + strandat 138.117 kb on - strandat 138.121 kb on - strandat 138.143 kb on + strandat 138.144 kb on - strandat 138.144 kb on - strandat 138.151 kb on + strandat 138.152 kb on - strandat 138.292 kb on + strand, within HMPREF1058_RS01400at 138.293 kb on - strand, within HMPREF1058_RS01400at 138.293 kb on - strand, within HMPREF1058_RS01400at 138.336 kb on + strand, within HMPREF1058_RS01400at 138.517 kb on + strand, within HMPREF1058_RS01400at 138.518 kb on - strand, within HMPREF1058_RS01400at 138.641 kb on - strand, within HMPREF1058_RS01400at 138.744 kb on - strandat 138.956 kb on + strand, within HMPREF1058_RS01395at 139.043 kb on + strand, within HMPREF1058_RS01395at 139.158 kb on + strand, within HMPREF1058_RS01395at 139.170 kb on - strand, within HMPREF1058_RS01395at 139.188 kb on + strand, within HMPREF1058_RS01395at 139.188 kb on + strand, within HMPREF1058_RS01395

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Per-strain Table

Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C)
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135,917 + HMPREF1058_RS01410 0.58 +0.2
135,938 + HMPREF1058_RS01410 0.59 -0.8
136,137 - HMPREF1058_RS01410 0.71 -0.5
136,152 - HMPREF1058_RS01410 0.72 +0.0
136,154 - HMPREF1058_RS01410 0.72 -2.1
136,268 + HMPREF1058_RS01410 0.79 +0.8
136,269 - HMPREF1058_RS01410 0.79 -0.0
136,270 + HMPREF1058_RS01410 0.79 +0.6
136,271 - HMPREF1058_RS01410 0.79 +0.5
136,370 + HMPREF1058_RS01410 0.85 +0.2
136,391 + HMPREF1058_RS01410 0.86 +0.3
136,391 + HMPREF1058_RS01410 0.86 +1.5
136,392 - HMPREF1058_RS01410 0.86 +0.1
136,460 + HMPREF1058_RS01410 0.90 -0.3
136,595 - +1.5
136,643 - +0.6
136,658 - +0.4
136,661 - +1.7
136,680 + +1.9
136,680 + +0.2
136,681 - -1.6
136,681 - +1.3
136,724 + +0.4
136,746 + -0.0
136,767 + -0.3
136,768 - -0.2
136,774 + -0.9
136,785 + -1.1
136,857 + +1.2
136,923 - +0.3
137,000 + HMPREF1058_RS01405 0.10 +0.4
137,091 - HMPREF1058_RS01405 0.17 +0.9
137,171 + HMPREF1058_RS01405 0.23 -0.8
137,213 + HMPREF1058_RS01405 0.26 -2.2
137,216 - HMPREF1058_RS01405 0.26 -0.7
137,216 - HMPREF1058_RS01405 0.26 -1.2
137,218 + HMPREF1058_RS01405 0.26 -2.4
137,231 + HMPREF1058_RS01405 0.27 +0.2
137,232 - HMPREF1058_RS01405 0.28 +1.5
137,538 - HMPREF1058_RS01405 0.51 -0.2
137,555 + HMPREF1058_RS01405 0.52 +1.1
137,651 + HMPREF1058_RS01405 0.59 +2.1
137,655 + HMPREF1058_RS01405 0.59 -0.1
137,656 - HMPREF1058_RS01405 0.59 -1.3
137,656 - HMPREF1058_RS01405 0.59 -1.8
137,657 + HMPREF1058_RS01405 0.60 -0.6
137,658 - HMPREF1058_RS01405 0.60 -1.4
137,669 - HMPREF1058_RS01405 0.60 -2.0
137,697 - HMPREF1058_RS01405 0.63 +2.1
137,697 - HMPREF1058_RS01405 0.63 -2.8
137,714 - HMPREF1058_RS01405 0.64 -1.8
137,715 + HMPREF1058_RS01405 0.64 -0.6
137,748 + HMPREF1058_RS01405 0.66 -0.2
137,789 - HMPREF1058_RS01405 0.69 -1.1
137,826 + HMPREF1058_RS01405 0.72 -2.7
137,974 + HMPREF1058_RS01405 0.83 -1.0
137,975 - HMPREF1058_RS01405 0.83 +2.1
138,116 + -0.6
138,116 + +0.4
138,117 - +1.3
138,121 - -0.2
138,143 + +1.4
138,144 - -0.7
138,144 - +0.6
138,151 + -0.7
138,152 - -1.8
138,292 + HMPREF1058_RS01400 0.18 +0.5
138,293 - HMPREF1058_RS01400 0.18 -1.2
138,293 - HMPREF1058_RS01400 0.18 -0.4
138,336 + HMPREF1058_RS01400 0.25 -0.3
138,517 + HMPREF1058_RS01400 0.57 +2.3
138,518 - HMPREF1058_RS01400 0.57 -2.6
138,641 - HMPREF1058_RS01400 0.78 +0.7
138,744 - -0.9
138,956 + HMPREF1058_RS01395 0.13 -0.9
139,043 + HMPREF1058_RS01395 0.19 -0.6
139,158 + HMPREF1058_RS01395 0.26 -1.1
139,170 - HMPREF1058_RS01395 0.27 -0.7
139,188 + HMPREF1058_RS01395 0.28 -0.0
139,188 + HMPREF1058_RS01395 0.28 -1.0

Or see this region's nucleotide sequence