Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS01395

Experiment: pectate 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pectate 2.5 mg/ml (C)
137,789	-		HMPREF1058_RS01405	0.69	-1.1
137,826	+		HMPREF1058_RS01405	0.72	-2.7
137,974	+		HMPREF1058_RS01405	0.83	-1.0
137,975	-		HMPREF1058_RS01405	0.83	+2.1
138,116	+				-0.6
138,116	+				+0.4
138,117	-				+1.3
138,121	-				-0.2
138,143	+				+1.4
138,144	-				-0.7
138,144	-				+0.6
138,151	+				-0.7
138,152	-				-1.8
138,292	+		HMPREF1058_RS01400	0.18	+0.5
138,293	-		HMPREF1058_RS01400	0.18	-1.2
138,293	-		HMPREF1058_RS01400	0.18	-0.4
138,336	+		HMPREF1058_RS01400	0.25	-0.3
138,517	+		HMPREF1058_RS01400	0.57	+2.3
138,518	-		HMPREF1058_RS01400	0.57	-2.6
138,641	-		HMPREF1058_RS01400	0.78	+0.7
138,744	-				-0.9
138,956	+		HMPREF1058_RS01395	0.13	-0.9
139,043	+		HMPREF1058_RS01395	0.19	-0.6
139,158	+		HMPREF1058_RS01395	0.26	-1.1
139,170	-		HMPREF1058_RS01395	0.27	-0.7
139,188	+		HMPREF1058_RS01395	0.28	-0.0
139,188	+		HMPREF1058_RS01395	0.28	-1.0
139,292	+		HMPREF1058_RS01395	0.35	-0.1
139,292	+		HMPREF1058_RS01395	0.35	-1.2
139,292	+		HMPREF1058_RS01395	0.35	-0.3
139,307	-		HMPREF1058_RS01395	0.36	-1.1
139,323	-		HMPREF1058_RS01395	0.37	-0.1
139,431	+		HMPREF1058_RS01395	0.45	-1.2
139,431	+		HMPREF1058_RS01395	0.45	+0.2
139,451	+		HMPREF1058_RS01395	0.46	-0.9
139,456	+		HMPREF1058_RS01395	0.46	-0.8
139,456	+		HMPREF1058_RS01395	0.46	-0.2
139,456	+		HMPREF1058_RS01395	0.46	+1.1
139,467	+		HMPREF1058_RS01395	0.47	+0.9
139,467	+		HMPREF1058_RS01395	0.47	-2.0
139,469	+		HMPREF1058_RS01395	0.47	+0.4
139,470	-		HMPREF1058_RS01395	0.47	+0.3
139,506	+		HMPREF1058_RS01395	0.50	+0.7
139,619	-		HMPREF1058_RS01395	0.57	+0.5
139,622	-		HMPREF1058_RS01395	0.57	-0.5
139,659	+		HMPREF1058_RS01395	0.60	+0.3
139,873	-		HMPREF1058_RS01395	0.74	-0.4
139,875	+		HMPREF1058_RS01395	0.74	+0.2
139,955	+		HMPREF1058_RS01395	0.80	+0.1
139,955	+		HMPREF1058_RS01395	0.80	+3.7
139,956	-		HMPREF1058_RS01395	0.80	-0.6
139,995	-		HMPREF1058_RS01395	0.82	-0.2
140,099	+		HMPREF1058_RS01395	0.89	-0.6
140,165	-				+0.3
140,184	+				-0.3
140,184	+				-0.2
140,276	+				+0.1
140,282	+				-0.5
140,320	+				+0.0
140,381	-		HMPREF1058_RS01390	0.13	-1.4
140,402	+		HMPREF1058_RS01390	0.15	+0.7
140,578	+		HMPREF1058_RS01390	0.33	-2.1
140,590	+		HMPREF1058_RS01390	0.34	+0.6
140,591	-		HMPREF1058_RS01390	0.34	-1.1
140,591	-		HMPREF1058_RS01390	0.34	-2.2
140,597	-				+0.1
140,597	-		HMPREF1058_RS01390	0.34	-1.0
140,697	+		HMPREF1058_RS01390	0.44	-0.5
140,697	+		HMPREF1058_RS01390	0.44	+0.1
140,856	-		HMPREF1058_RS01390	0.60	-1.1
140,858	-		HMPREF1058_RS01390	0.60	-0.6
140,946	-		HMPREF1058_RS01390	0.69	-0.2
140,988	+		HMPREF1058_RS01390	0.73	-0.4
141,068	-		HMPREF1058_RS01390	0.81	-0.4
141,068	-		HMPREF1058_RS01390	0.81	-1.6
141,193	+				-1.0
141,249	-				+1.7