Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS21210 and HMPREF1058_RS01290 are separated by 780 nucleotides HMPREF1058_RS01290 and HMPREF1058_RS01285 are separated by 51 nucleotides HMPREF1058_RS01285 and HMPREF1058_RS01280 overlap by 7 nucleotides
HMPREF1058_RS21210: HMPREF1058_RS21210 - hypothetical protein, at 163,387 to 163,640
_RS21210
HMPREF1058_RS01290: HMPREF1058_RS01290 - DUF1622 domain-containing protein, at 164,421 to 164,762
_RS01290
HMPREF1058_RS01285: HMPREF1058_RS01285 - alpha-ribazole phosphatase, at 164,814 to 165,344
_RS01285
HMPREF1058_RS01280: HMPREF1058_RS01280 - adenosylcobinamide-GDP ribazoletransferase, at 165,338 to 166,087
_RS01280
Position (kb) 164
165 Strain fitness (log2 ratio) -2
-1
0
1
2 at 163.456 kb on - strand, within HMPREF1058_RS21210 at 163.519 kb on + strand, within HMPREF1058_RS21210 at 163.562 kb on + strand, within HMPREF1058_RS21210 at 163.563 kb on - strand, within HMPREF1058_RS21210 at 163.576 kb on + strand, within HMPREF1058_RS21210 at 163.766 kb on + strand at 163.766 kb on + strand at 163.801 kb on + strand at 163.821 kb on + strand at 163.834 kb on - strand at 164.107 kb on - strand at 164.290 kb on + strand at 164.297 kb on + strand at 164.312 kb on + strand at 164.315 kb on + strand at 164.315 kb on + strand at 164.389 kb on + strand at 164.393 kb on + strand at 164.393 kb on + strand at 164.394 kb on - strand at 164.449 kb on - strand at 164.495 kb on + strand, within HMPREF1058_RS01290 at 164.495 kb on + strand, within HMPREF1058_RS01290 at 164.496 kb on - strand, within HMPREF1058_RS01290 at 164.600 kb on + strand, within HMPREF1058_RS01290 at 164.601 kb on - strand, within HMPREF1058_RS01290 at 164.608 kb on - strand, within HMPREF1058_RS01290 at 164.796 kb on - strand at 164.810 kb on + strand at 164.810 kb on + strand at 164.810 kb on + strand at 164.810 kb on + strand at 164.810 kb on + strand at 164.827 kb on - strand at 164.846 kb on - strand at 164.894 kb on - strand, within HMPREF1058_RS01285 at 165.194 kb on + strand, within HMPREF1058_RS01285 at 165.214 kb on - strand, within HMPREF1058_RS01285 at 165.334 kb on + strand at 165.336 kb on + strand at 165.337 kb on - strand at 165.337 kb on - strand at 165.355 kb on - strand at 165.425 kb on - strand, within HMPREF1058_RS01280 at 165.527 kb on - strand at 165.582 kb on + strand, within HMPREF1058_RS01280 at 165.582 kb on + strand, within HMPREF1058_RS01280 at 165.583 kb on - strand, within HMPREF1058_RS01280 at 165.720 kb on - strand, within HMPREF1058_RS01280 at 165.721 kb on + strand, within HMPREF1058_RS01280 at 165.742 kb on - strand, within HMPREF1058_RS01280 at 165.750 kb on - strand, within HMPREF1058_RS01280
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 163,456 - HMPREF1058_RS21210 0.27 -0.1 163,519 + HMPREF1058_RS21210 0.52 +2.1 163,562 + HMPREF1058_RS21210 0.69 +0.9 163,563 - HMPREF1058_RS21210 0.69 -0.0 163,576 + HMPREF1058_RS21210 0.74 +1.6 163,766 + +0.7 163,766 + +1.8 163,801 + -0.9 163,821 + +1.6 163,834 - -0.6 164,107 - -0.5 164,290 + +0.5 164,297 + -0.6 164,312 + +0.4 164,315 + -2.2 164,315 + -0.4 164,389 + +0.1 164,393 + +0.2 164,393 + -0.2 164,394 - -0.0 164,449 - -0.0 164,495 + HMPREF1058_RS01290 0.22 -0.2 164,495 + HMPREF1058_RS01290 0.22 -0.8 164,496 - HMPREF1058_RS01290 0.22 -1.1 164,600 + HMPREF1058_RS01290 0.52 -1.5 164,601 - HMPREF1058_RS01290 0.53 -0.4 164,608 - HMPREF1058_RS01290 0.55 +0.3 164,796 - +0.3 164,810 + -0.4 164,810 + -1.6 164,810 + +0.4 164,810 + +0.0 164,810 + -0.2 164,827 - -0.6 164,846 - +0.7 164,894 - HMPREF1058_RS01285 0.15 +0.2 165,194 + HMPREF1058_RS01285 0.72 -1.1 165,214 - HMPREF1058_RS01285 0.75 -0.6 165,334 + -0.3 165,336 + +0.5 165,337 - -0.2 165,337 - -0.3 165,355 - +0.7 165,425 - HMPREF1058_RS01280 0.12 -0.6 165,527 - -0.9 165,582 + HMPREF1058_RS01280 0.33 +0.3 165,582 + HMPREF1058_RS01280 0.33 +0.3 165,583 - HMPREF1058_RS01280 0.33 +1.3 165,720 - HMPREF1058_RS01280 0.51 -0.5 165,721 + HMPREF1058_RS01280 0.51 -0.4 165,742 - HMPREF1058_RS01280 0.54 -0.0 165,750 - HMPREF1058_RS01280 0.55 -1.2
Or see this region's nucleotide sequence