Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS00635

Experiment: pectate 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS00645 and HMPREF1058_RS00640 are separated by 11 nucleotidesHMPREF1058_RS00640 and HMPREF1058_RS00635 are separated by 41 nucleotidesHMPREF1058_RS00635 and HMPREF1058_RS00630 are separated by 194 nucleotides HMPREF1058_RS00645: HMPREF1058_RS00645 - phenylacetate--CoA ligase, at 24,537 to 25,835 _RS00645 HMPREF1058_RS00640: HMPREF1058_RS00640 - amino acid-binding protein, at 25,847 to 26,275 _RS00640 HMPREF1058_RS00635: HMPREF1058_RS00635 - substrate-binding domain-containing protein, at 26,317 to 29,043 _RS00635 HMPREF1058_RS00630: HMPREF1058_RS00630 - carbohydrate kinase, at 29,238 to 30,125 _RS00630 Position (kb) 26 27 28 29 30Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 25.317 kb on + strand, within HMPREF1058_RS00645at 25.317 kb on + strand, within HMPREF1058_RS00645at 25.318 kb on - strand, within HMPREF1058_RS00645at 25.318 kb on - strand, within HMPREF1058_RS00645at 25.318 kb on - strand, within HMPREF1058_RS00645at 25.426 kb on - strand, within HMPREF1058_RS00645at 25.573 kb on + strand, within HMPREF1058_RS00645at 25.573 kb on + strand, within HMPREF1058_RS00645at 25.573 kb on + strand, within HMPREF1058_RS00645at 25.574 kb on - strand, within HMPREF1058_RS00645at 25.684 kb on - strand, within HMPREF1058_RS00645at 25.854 kb on + strandat 25.855 kb on - strandat 25.855 kb on - strandat 25.864 kb on - strandat 25.932 kb on + strand, within HMPREF1058_RS00640at 25.933 kb on - strand, within HMPREF1058_RS00640at 25.966 kb on - strand, within HMPREF1058_RS00640at 25.970 kb on + strand, within HMPREF1058_RS00640at 25.976 kb on - strand, within HMPREF1058_RS00640at 26.137 kb on + strand, within HMPREF1058_RS00640at 26.141 kb on + strand, within HMPREF1058_RS00640at 26.147 kb on + strand, within HMPREF1058_RS00640at 26.318 kb on + strandat 26.318 kb on + strandat 26.361 kb on - strandat 26.412 kb on - strandat 26.671 kb on - strand, within HMPREF1058_RS00635at 26.709 kb on + strand, within HMPREF1058_RS00635at 26.752 kb on - strand, within HMPREF1058_RS00635at 26.940 kb on - strand, within HMPREF1058_RS00635at 26.946 kb on + strand, within HMPREF1058_RS00635at 26.984 kb on - strand, within HMPREF1058_RS00635at 26.991 kb on + strand, within HMPREF1058_RS00635at 27.028 kb on + strand, within HMPREF1058_RS00635at 27.028 kb on + strand, within HMPREF1058_RS00635at 27.029 kb on - strand, within HMPREF1058_RS00635at 27.132 kb on + strand, within HMPREF1058_RS00635at 27.392 kb on + strand, within HMPREF1058_RS00635at 27.438 kb on + strand, within HMPREF1058_RS00635at 27.479 kb on - strand, within HMPREF1058_RS00635at 27.479 kb on - strand, within HMPREF1058_RS00635at 27.723 kb on + strand, within HMPREF1058_RS00635at 27.723 kb on + strand, within HMPREF1058_RS00635at 27.723 kb on + strand, within HMPREF1058_RS00635at 27.724 kb on - strand, within HMPREF1058_RS00635at 27.724 kb on - strand, within HMPREF1058_RS00635at 27.776 kb on - strand, within HMPREF1058_RS00635at 28.053 kb on - strand, within HMPREF1058_RS00635at 28.080 kb on + strand, within HMPREF1058_RS00635at 28.180 kb on - strand, within HMPREF1058_RS00635at 28.180 kb on - strand, within HMPREF1058_RS00635at 28.182 kb on + strand, within HMPREF1058_RS00635at 28.212 kb on + strand, within HMPREF1058_RS00635at 28.213 kb on - strand, within HMPREF1058_RS00635at 28.254 kb on - strand, within HMPREF1058_RS00635at 28.376 kb on + strand, within HMPREF1058_RS00635at 28.421 kb on - strand, within HMPREF1058_RS00635at 28.421 kb on - strand, within HMPREF1058_RS00635at 28.626 kb on + strand, within HMPREF1058_RS00635at 28.626 kb on + strand, within HMPREF1058_RS00635at 28.627 kb on - strand, within HMPREF1058_RS00635at 28.627 kb on - strand, within HMPREF1058_RS00635at 28.628 kb on + strand, within HMPREF1058_RS00635at 28.629 kb on - strand, within HMPREF1058_RS00635at 28.659 kb on + strand, within HMPREF1058_RS00635at 28.681 kb on - strand, within HMPREF1058_RS00635at 28.681 kb on - strand, within HMPREF1058_RS00635at 28.818 kb on - strandat 28.824 kb on + strandat 28.825 kb on - strandat 28.831 kb on + strandat 28.945 kb on - strandat 28.965 kb on - strandat 28.974 kb on + strandat 29.062 kb on - strandat 29.062 kb on - strandat 29.075 kb on - strandat 29.146 kb on - strandat 29.158 kb on - strandat 29.298 kb on + strandat 29.298 kb on + strandat 29.299 kb on - strandat 29.299 kb on - strandat 29.299 kb on - strandat 29.299 kb on - strandat 29.302 kb on + strandat 29.303 kb on - strandat 29.327 kb on + strand, within HMPREF1058_RS00630at 29.465 kb on - strand, within HMPREF1058_RS00630at 29.510 kb on - strand, within HMPREF1058_RS00630at 29.534 kb on + strand, within HMPREF1058_RS00630at 29.567 kb on + strand, within HMPREF1058_RS00630at 29.609 kb on + strand, within HMPREF1058_RS00630at 29.649 kb on - strand, within HMPREF1058_RS00630at 29.775 kb on + strand, within HMPREF1058_RS00630at 29.825 kb on + strand, within HMPREF1058_RS00630at 29.850 kb on + strand, within HMPREF1058_RS00630at 29.857 kb on + strand, within HMPREF1058_RS00630at 29.857 kb on + strandat 29.858 kb on - strand, within HMPREF1058_RS00630at 29.861 kb on + strandat 29.861 kb on + strand, within HMPREF1058_RS00630at 29.862 kb on - strand, within HMPREF1058_RS00630at 29.862 kb on - strand, within HMPREF1058_RS00630at 29.862 kb on - strand, within HMPREF1058_RS00630at 29.862 kb on - strand, within HMPREF1058_RS00630at 29.862 kb on - strand, within HMPREF1058_RS00630at 29.862 kb on - strand, within HMPREF1058_RS00630

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C)
remove
25,317 + HMPREF1058_RS00645 0.60 +0.1
25,317 + HMPREF1058_RS00645 0.60 +0.5
25,318 - HMPREF1058_RS00645 0.60 +0.7
25,318 - HMPREF1058_RS00645 0.60 -0.4
25,318 - HMPREF1058_RS00645 0.60 -0.6
25,426 - HMPREF1058_RS00645 0.68 +1.0
25,573 + HMPREF1058_RS00645 0.80 +0.7
25,573 + HMPREF1058_RS00645 0.80 -0.4
25,573 + HMPREF1058_RS00645 0.80 +0.0
25,574 - HMPREF1058_RS00645 0.80 -0.1
25,684 - HMPREF1058_RS00645 0.88 -0.3
25,854 + +0.2
25,855 - -0.1
25,855 - +0.3
25,864 - -0.7
25,932 + HMPREF1058_RS00640 0.20 +2.2
25,933 - HMPREF1058_RS00640 0.20 +0.5
25,966 - HMPREF1058_RS00640 0.28 +0.4
25,970 + HMPREF1058_RS00640 0.29 +2.0
25,976 - HMPREF1058_RS00640 0.30 -0.6
26,137 + HMPREF1058_RS00640 0.68 -0.8
26,141 + HMPREF1058_RS00640 0.69 +0.0
26,147 + HMPREF1058_RS00640 0.70 -1.0
26,318 + -0.3
26,318 + +0.9
26,361 - -2.3
26,412 - -3.9
26,671 - HMPREF1058_RS00635 0.13 -1.8
26,709 + HMPREF1058_RS00635 0.14 -3.0
26,752 - HMPREF1058_RS00635 0.16 -1.9
26,940 - HMPREF1058_RS00635 0.23 -2.9
26,946 + HMPREF1058_RS00635 0.23 -1.0
26,984 - HMPREF1058_RS00635 0.24 -1.6
26,991 + HMPREF1058_RS00635 0.25 -1.9
27,028 + HMPREF1058_RS00635 0.26 -0.9
27,028 + HMPREF1058_RS00635 0.26 -1.5
27,029 - HMPREF1058_RS00635 0.26 -0.4
27,132 + HMPREF1058_RS00635 0.30 -2.4
27,392 + HMPREF1058_RS00635 0.39 -2.2
27,438 + HMPREF1058_RS00635 0.41 -0.8
27,479 - HMPREF1058_RS00635 0.43 -1.9
27,479 - HMPREF1058_RS00635 0.43 -0.2
27,723 + HMPREF1058_RS00635 0.52 -0.8
27,723 + HMPREF1058_RS00635 0.52 -2.5
27,723 + HMPREF1058_RS00635 0.52 -3.4
27,724 - HMPREF1058_RS00635 0.52 -2.2
27,724 - HMPREF1058_RS00635 0.52 -1.7
27,776 - HMPREF1058_RS00635 0.54 -1.2
28,053 - HMPREF1058_RS00635 0.64 -4.0
28,080 + HMPREF1058_RS00635 0.65 -1.7
28,180 - HMPREF1058_RS00635 0.68 -3.6
28,180 - HMPREF1058_RS00635 0.68 -1.7
28,182 + HMPREF1058_RS00635 0.68 -0.4
28,212 + HMPREF1058_RS00635 0.69 -2.9
28,213 - HMPREF1058_RS00635 0.70 -1.6
28,254 - HMPREF1058_RS00635 0.71 -1.3
28,376 + HMPREF1058_RS00635 0.76 -0.5
28,421 - HMPREF1058_RS00635 0.77 -1.2
28,421 - HMPREF1058_RS00635 0.77 -0.4
28,626 + HMPREF1058_RS00635 0.85 -3.1
28,626 + HMPREF1058_RS00635 0.85 -0.8
28,627 - HMPREF1058_RS00635 0.85 -0.2
28,627 - HMPREF1058_RS00635 0.85 -1.3
28,628 + HMPREF1058_RS00635 0.85 -2.4
28,629 - HMPREF1058_RS00635 0.85 -2.0
28,659 + HMPREF1058_RS00635 0.86 -3.7
28,681 - HMPREF1058_RS00635 0.87 -2.8
28,681 - HMPREF1058_RS00635 0.87 -1.7
28,818 - -1.1
28,824 + -0.8
28,825 - -2.8
28,831 + -1.3
28,945 - -1.5
28,965 - -0.8
28,974 + -1.5
29,062 - -0.4
29,062 - +0.3
29,075 - +0.4
29,146 - -0.2
29,158 - +1.0
29,298 + -0.1
29,298 + -0.0
29,299 - -1.0
29,299 - -0.5
29,299 - +0.5
29,299 - -0.4
29,302 + -1.7
29,303 - -1.2
29,327 + HMPREF1058_RS00630 0.10 -1.0
29,465 - HMPREF1058_RS00630 0.26 -0.8
29,510 - HMPREF1058_RS00630 0.31 -0.7
29,534 + HMPREF1058_RS00630 0.33 -1.0
29,567 + HMPREF1058_RS00630 0.37 -0.6
29,609 + HMPREF1058_RS00630 0.42 -0.8
29,649 - HMPREF1058_RS00630 0.46 -1.4
29,775 + HMPREF1058_RS00630 0.60 +0.1
29,825 + HMPREF1058_RS00630 0.66 +0.4
29,850 + HMPREF1058_RS00630 0.69 -2.6
29,857 + HMPREF1058_RS00630 0.70 -0.9
29,857 + -1.5
29,858 - HMPREF1058_RS00630 0.70 -0.9
29,861 + -0.4
29,861 + HMPREF1058_RS00630 0.70 -1.2
29,862 - HMPREF1058_RS00630 0.70 -0.9
29,862 - HMPREF1058_RS00630 0.70 -2.8
29,862 - HMPREF1058_RS00630 0.70 -0.9
29,862 - HMPREF1058_RS00630 0.70 -1.3
29,862 - HMPREF1058_RS00630 0.70 +0.0
29,862 - HMPREF1058_RS00630 0.70 -1.3

Or see this region's nucleotide sequence