Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS00620

Experiment: pectate 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pectate 2.5 mg/ml (C)
30,356	+		HMPREF1058_RS00625	0.17	-0.4
30,357	-		HMPREF1058_RS00625	0.18	-0.4
30,357	-		HMPREF1058_RS00625	0.18	-3.0
30,432	+		HMPREF1058_RS00625	0.24	-1.3
30,506	+		HMPREF1058_RS00625	0.30	-0.2
30,678	-		HMPREF1058_RS00625	0.45	-0.8
30,791	+		HMPREF1058_RS00625	0.55	-0.7
30,792	-		HMPREF1058_RS00625	0.55	-1.4
30,794	-		HMPREF1058_RS00625	0.55	-1.0
30,804	+		HMPREF1058_RS00625	0.56	-0.7
30,804	+		HMPREF1058_RS00625	0.56	+0.2
30,805	-		HMPREF1058_RS00625	0.56	-0.0
30,865	+		HMPREF1058_RS00625	0.61	-0.6
30,941	+		HMPREF1058_RS00625	0.68	-0.2
30,944	+		HMPREF1058_RS00625	0.68	-0.3
31,104	+		HMPREF1058_RS00625	0.82	+0.3
31,109	+		HMPREF1058_RS00625	0.82	-0.4
31,109	+		HMPREF1058_RS00625	0.82	-1.0
31,109	+		HMPREF1058_RS00625	0.82	-0.8
31,121	+		HMPREF1058_RS00625	0.83	-0.4
31,122	-				-0.4
31,127	+		HMPREF1058_RS00625	0.84	-2.3
31,173	+		HMPREF1058_RS00625	0.88	-0.5
31,174	-		HMPREF1058_RS00625	0.88	-0.4
31,243	-				-0.5
31,292	-				-1.1
31,320	-				-0.5
31,338	+				+0.1
31,344	-				-0.0
31,346	-				-0.5
31,347	+				+0.2
31,405	+				-1.3
31,431	-				-1.0
31,574	+		HMPREF1058_RS00620	0.13	-3.2
31,585	+		HMPREF1058_RS00620	0.14	-0.6
31,968	+		HMPREF1058_RS00620	0.34	-0.0
31,969	-		HMPREF1058_RS00620	0.34	-0.7
31,971	-		HMPREF1058_RS00620	0.34	-0.6
31,976	+				-1.8
31,976	+		HMPREF1058_RS00620	0.34	-1.4
31,979	-		HMPREF1058_RS00620	0.35	+0.1
31,979	-		HMPREF1058_RS00620	0.35	+0.6
31,982	+		HMPREF1058_RS00620	0.35	-1.9
31,983	-		HMPREF1058_RS00620	0.35	-0.4
32,007	-		HMPREF1058_RS00620	0.36	-0.4
32,109	+		HMPREF1058_RS00620	0.41	-0.7
32,110	-		HMPREF1058_RS00620	0.41	+0.2
32,110	-		HMPREF1058_RS00620	0.41	-0.0
32,139	-		HMPREF1058_RS00620	0.43	-0.3
32,144	-		HMPREF1058_RS00620	0.43	+0.9
32,144	-		HMPREF1058_RS00620	0.43	-0.4
32,144	-		HMPREF1058_RS00620	0.43	-0.6
32,226	+		HMPREF1058_RS00620	0.48	-0.7
32,302	+		HMPREF1058_RS00620	0.52	-1.3
32,303	-		HMPREF1058_RS00620	0.52	-0.3
32,343	-		HMPREF1058_RS00620	0.54	-1.1
32,438	+		HMPREF1058_RS00620	0.59	-2.7
32,458	+		HMPREF1058_RS00620	0.60	-1.0
32,466	-		HMPREF1058_RS00620	0.60	-0.0
32,471	+		HMPREF1058_RS00620	0.61	-2.0
32,471	+		HMPREF1058_RS00620	0.61	-0.7
32,498	+		HMPREF1058_RS00620	0.62	-1.8
32,526	+		HMPREF1058_RS00620	0.64	-1.7
32,528	+		HMPREF1058_RS00620	0.64	-1.5
32,528	+		HMPREF1058_RS00620	0.64	-2.1
32,544	-		HMPREF1058_RS00620	0.64	-0.6
32,561	+		HMPREF1058_RS00620	0.65	-1.4
32,586	-		HMPREF1058_RS00620	0.67	-0.8
32,630	+		HMPREF1058_RS00620	0.69	-1.0
32,631	-		HMPREF1058_RS00620	0.69	+1.2
32,729	+		HMPREF1058_RS00620	0.74	-2.3
32,729	+		HMPREF1058_RS00620	0.74	-1.2
32,764	+		HMPREF1058_RS00620	0.76	-0.6
32,846	+		HMPREF1058_RS00620	0.81	-0.5
32,957	-		HMPREF1058_RS00620	0.86	-0.3
32,957	-		HMPREF1058_RS00620	0.86	+0.9
32,957	-		HMPREF1058_RS00620	0.86	-0.4
32,959	+		HMPREF1058_RS00620	0.87	-1.6
33,028	-				-1.6
33,089	+				-1.5
33,093	+				-1.0
33,094	-				+0.2
33,107	+				-1.4
33,218	-				-0.5
33,218	-				+0.9
33,219	+				-1.0
33,310	-				-1.4
33,314	-				-2.4
33,316	-				+0.3
33,408	-				-0.9
33,435	-				-1.0
33,647	-		HMPREF1058_RS00615	0.12	-1.1
33,676	-		HMPREF1058_RS00615	0.14	-0.8
33,866	-		HMPREF1058_RS00615	0.22	-0.2
33,881	+		HMPREF1058_RS00615	0.22	+1.2
33,900	+		HMPREF1058_RS00615	0.23	-0.5
33,904	-		HMPREF1058_RS00615	0.23	-1.3
33,910	-		HMPREF1058_RS00615	0.24	-2.2
33,952	-		HMPREF1058_RS00615	0.25	+0.0
33,966	-		HMPREF1058_RS00615	0.26	-0.6
34,008	-		HMPREF1058_RS00615	0.28	-1.5
34,202	-				-1.7
34,202	-		HMPREF1058_RS00615	0.36	+0.4