Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS00615

Experiment: pectate 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pectate 2.5 mg/ml (C)
32,438	+		HMPREF1058_RS00620	0.59	-2.7
32,458	+		HMPREF1058_RS00620	0.60	-1.0
32,466	-		HMPREF1058_RS00620	0.60	-0.0
32,471	+		HMPREF1058_RS00620	0.61	-2.0
32,471	+		HMPREF1058_RS00620	0.61	-0.7
32,498	+		HMPREF1058_RS00620	0.62	-1.8
32,526	+		HMPREF1058_RS00620	0.64	-1.7
32,528	+		HMPREF1058_RS00620	0.64	-1.5
32,528	+		HMPREF1058_RS00620	0.64	-2.1
32,544	-		HMPREF1058_RS00620	0.64	-0.6
32,561	+		HMPREF1058_RS00620	0.65	-1.4
32,586	-		HMPREF1058_RS00620	0.67	-0.8
32,630	+		HMPREF1058_RS00620	0.69	-1.0
32,631	-		HMPREF1058_RS00620	0.69	+1.2
32,729	+		HMPREF1058_RS00620	0.74	-2.3
32,729	+		HMPREF1058_RS00620	0.74	-1.2
32,764	+		HMPREF1058_RS00620	0.76	-0.6
32,846	+		HMPREF1058_RS00620	0.81	-0.5
32,957	-		HMPREF1058_RS00620	0.86	-0.3
32,957	-		HMPREF1058_RS00620	0.86	+0.9
32,957	-		HMPREF1058_RS00620	0.86	-0.4
32,959	+		HMPREF1058_RS00620	0.87	-1.6
33,028	-				-1.6
33,089	+				-1.5
33,093	+				-1.0
33,094	-				+0.2
33,107	+				-1.4
33,218	-				-0.5
33,218	-				+0.9
33,219	+				-1.0
33,310	-				-1.4
33,314	-				-2.4
33,316	-				+0.3
33,408	-				-0.9
33,435	-				-1.0
33,647	-		HMPREF1058_RS00615	0.12	-1.1
33,676	-		HMPREF1058_RS00615	0.14	-0.8
33,866	-		HMPREF1058_RS00615	0.22	-0.2
33,881	+		HMPREF1058_RS00615	0.22	+1.2
33,900	+		HMPREF1058_RS00615	0.23	-0.5
33,904	-		HMPREF1058_RS00615	0.23	-1.3
33,910	-		HMPREF1058_RS00615	0.24	-2.2
33,952	-		HMPREF1058_RS00615	0.25	+0.0
33,966	-		HMPREF1058_RS00615	0.26	-0.6
34,008	-		HMPREF1058_RS00615	0.28	-1.5
34,202	-				-1.7
34,202	-		HMPREF1058_RS00615	0.36	+0.4
34,276	-		HMPREF1058_RS00615	0.39	-1.3
34,276	-		HMPREF1058_RS00615	0.39	-0.7
34,276	-		HMPREF1058_RS00615	0.39	-0.7
34,277	+		HMPREF1058_RS00615	0.39	-1.1
34,277	+		HMPREF1058_RS00615	0.39	-2.0
34,277	+		HMPREF1058_RS00615	0.39	-0.7
34,278	-		HMPREF1058_RS00615	0.40	+0.4
34,331	+		HMPREF1058_RS00615	0.42	-1.8
34,332	-		HMPREF1058_RS00615	0.42	-0.6
34,369	-		HMPREF1058_RS00615	0.43	-0.9
34,369	-				+0.4
34,404	-		HMPREF1058_RS00615	0.45	-0.3
34,404	-		HMPREF1058_RS00615	0.45	-1.1
34,431	+		HMPREF1058_RS00615	0.46	-2.0
34,433	+		HMPREF1058_RS00615	0.46	-2.1
34,433	+		HMPREF1058_RS00615	0.46	-1.3
34,509	+		HMPREF1058_RS00615	0.50	-1.1
34,517	+		HMPREF1058_RS00615	0.50	-0.7
34,518	-		HMPREF1058_RS00615	0.50	-0.5
34,525	-		HMPREF1058_RS00615	0.50	-1.5
34,553	+		HMPREF1058_RS00615	0.51	-0.2
34,554	-		HMPREF1058_RS00615	0.51	+0.2
34,584	+		HMPREF1058_RS00615	0.53	+1.8
34,614	+		HMPREF1058_RS00615	0.54	+1.2
34,630	+		HMPREF1058_RS00615	0.55	+0.4
34,630	+		HMPREF1058_RS00615	0.55	-1.0
34,631	-		HMPREF1058_RS00615	0.55	-0.2
34,631	-		HMPREF1058_RS00615	0.55	-0.7
34,631	-		HMPREF1058_RS00615	0.55	-0.5
34,631	-		HMPREF1058_RS00615	0.55	-0.7
34,666	+		HMPREF1058_RS00615	0.56	-1.1
34,667	-		HMPREF1058_RS00615	0.56	+0.2
34,667	-		HMPREF1058_RS00615	0.56	-0.7
34,667	-		HMPREF1058_RS00615	0.56	-0.6
34,743	+		HMPREF1058_RS00615	0.60	-1.2
34,744	-		HMPREF1058_RS00615	0.60	-1.3
34,766	+		HMPREF1058_RS00615	0.61	-1.8
34,766	+		HMPREF1058_RS00615	0.61	-1.3
34,766	+		HMPREF1058_RS00615	0.61	-1.9
34,787	+		HMPREF1058_RS00615	0.61	-1.9
34,794	+		HMPREF1058_RS00615	0.62	-1.6
34,794	+		HMPREF1058_RS00615	0.62	+1.0
34,919	+		HMPREF1058_RS00615	0.67	-1.7
35,003	+		HMPREF1058_RS00615	0.71	-0.4
35,003	+		HMPREF1058_RS00615	0.71	-0.8
35,055	-		HMPREF1058_RS00615	0.73	-1.0
35,115	+		HMPREF1058_RS00615	0.76	+1.0
35,118	-		HMPREF1058_RS00615	0.76	-0.7
35,183	+		HMPREF1058_RS00615	0.79	-1.6
35,270	+		HMPREF1058_RS00615	0.82	+0.3
35,271	-		HMPREF1058_RS00615	0.82	+1.1
35,341	+		HMPREF1058_RS00615	0.85	-1.0
35,341	+		HMPREF1058_RS00615	0.85	-2.2
35,355	+		HMPREF1058_RS00615	0.86	-1.2
35,430	+		HMPREF1058_RS00615	0.89	-0.3
35,446	-		HMPREF1058_RS00615	0.90	-0.7
35,446	-		HMPREF1058_RS00615	0.90	+1.3
35,448	-				-1.2
35,590	-				-2.4
35,633	-				+1.2
35,685	+				-0.9
35,685	+				-1.5
35,686	-				-0.8
35,686	-				-0.8
35,798	+				-0.7
35,799	-				-0.9
35,968	+				-0.4
36,071	+				+0.1
36,109	+				-0.2
36,129	-				+0.1
36,176	-				-1.1
36,176	-				+0.4
36,241	+				-1.0
36,289	-				-0.2
36,300	+				-0.0
36,481	+		HMPREF1058_RS00610	0.27	+0.3
36,533	-		HMPREF1058_RS00610	0.36	-1.0
36,631	+		HMPREF1058_RS00610	0.52	-0.9
36,632	-		HMPREF1058_RS00610	0.52	-0.0
36,668	-		HMPREF1058_RS00610	0.58	-0.8