Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00600 and HMPREF1058_RS00595 are separated by 175 nucleotides HMPREF1058_RS00595 and HMPREF1058_RS00590 are separated by 87 nucleotides
HMPREF1058_RS00600: HMPREF1058_RS00600 - diaminopimelate dehydrogenase, at 37,881 to 38,780
_RS00600
HMPREF1058_RS00595: HMPREF1058_RS00595 - Holliday junction branch migration protein RuvA, at 38,956 to 39,549
_RS00595
HMPREF1058_RS00590: HMPREF1058_RS00590 - hypothetical protein, at 39,637 to 40,461
_RS00590
Position (kb) 38
39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 38.024 kb on + strand, within HMPREF1058_RS00600 at 38.028 kb on - strand, within HMPREF1058_RS00600 at 38.161 kb on - strand, within HMPREF1058_RS00600 at 38.230 kb on + strand, within HMPREF1058_RS00600 at 38.231 kb on - strand, within HMPREF1058_RS00600 at 38.231 kb on - strand, within HMPREF1058_RS00600 at 38.231 kb on - strand, within HMPREF1058_RS00600 at 38.231 kb on - strand, within HMPREF1058_RS00600 at 38.353 kb on + strand, within HMPREF1058_RS00600 at 38.353 kb on + strand, within HMPREF1058_RS00600 at 38.354 kb on - strand, within HMPREF1058_RS00600 at 38.357 kb on + strand, within HMPREF1058_RS00600 at 38.358 kb on - strand at 38.358 kb on - strand, within HMPREF1058_RS00600 at 38.358 kb on - strand, within HMPREF1058_RS00600 at 38.358 kb on - strand, within HMPREF1058_RS00600 at 38.358 kb on - strand, within HMPREF1058_RS00600 at 38.358 kb on - strand, within HMPREF1058_RS00600 at 38.435 kb on + strand, within HMPREF1058_RS00600 at 38.514 kb on - strand, within HMPREF1058_RS00600 at 38.514 kb on - strand, within HMPREF1058_RS00600 at 38.518 kb on - strand, within HMPREF1058_RS00600 at 38.616 kb on + strand, within HMPREF1058_RS00600 at 38.618 kb on + strand, within HMPREF1058_RS00600 at 38.619 kb on - strand, within HMPREF1058_RS00600 at 38.728 kb on - strand at 38.893 kb on + strand at 38.960 kb on + strand at 39.054 kb on + strand, within HMPREF1058_RS00595 at 39.085 kb on - strand, within HMPREF1058_RS00595 at 39.096 kb on + strand, within HMPREF1058_RS00595 at 39.124 kb on + strand, within HMPREF1058_RS00595 at 39.128 kb on + strand, within HMPREF1058_RS00595 at 39.129 kb on - strand, within HMPREF1058_RS00595 at 39.326 kb on + strand, within HMPREF1058_RS00595 at 39.327 kb on - strand, within HMPREF1058_RS00595 at 39.548 kb on - strand at 39.548 kb on - strand at 39.556 kb on + strand at 39.557 kb on - strand at 39.638 kb on + strand at 39.639 kb on - strand at 39.639 kb on - strand at 39.705 kb on + strand at 39.801 kb on - strand, within HMPREF1058_RS00590 at 39.855 kb on + strand, within HMPREF1058_RS00590 at 40.024 kb on - strand, within HMPREF1058_RS00590 at 40.029 kb on + strand, within HMPREF1058_RS00590 at 40.115 kb on + strand, within HMPREF1058_RS00590 at 40.120 kb on - strand, within HMPREF1058_RS00590 at 40.133 kb on + strand, within HMPREF1058_RS00590 at 40.134 kb on - strand, within HMPREF1058_RS00590 at 40.318 kb on + strand, within HMPREF1058_RS00590 at 40.442 kb on - strand at 40.444 kb on + strand at 40.444 kb on + strand at 40.464 kb on - strand at 40.476 kb on + strand at 40.476 kb on + strand at 40.476 kb on + strand at 40.477 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 38,024 + HMPREF1058_RS00600 0.16 +0.1 38,028 - HMPREF1058_RS00600 0.16 -0.8 38,161 - HMPREF1058_RS00600 0.31 -0.3 38,230 + HMPREF1058_RS00600 0.39 +0.2 38,231 - HMPREF1058_RS00600 0.39 -1.1 38,231 - HMPREF1058_RS00600 0.39 -0.8 38,231 - HMPREF1058_RS00600 0.39 -0.8 38,231 - HMPREF1058_RS00600 0.39 +0.2 38,353 + HMPREF1058_RS00600 0.52 -0.4 38,353 + HMPREF1058_RS00600 0.52 +3.1 38,354 - HMPREF1058_RS00600 0.53 +0.1 38,357 + HMPREF1058_RS00600 0.53 -0.1 38,358 - +0.4 38,358 - HMPREF1058_RS00600 0.53 -0.1 38,358 - HMPREF1058_RS00600 0.53 -0.8 38,358 - HMPREF1058_RS00600 0.53 -1.6 38,358 - HMPREF1058_RS00600 0.53 +0.3 38,358 - HMPREF1058_RS00600 0.53 +0.2 38,435 + HMPREF1058_RS00600 0.62 -1.0 38,514 - HMPREF1058_RS00600 0.70 +1.0 38,514 - HMPREF1058_RS00600 0.70 -0.2 38,518 - HMPREF1058_RS00600 0.71 +0.3 38,616 + HMPREF1058_RS00600 0.82 +0.3 38,618 + HMPREF1058_RS00600 0.82 -1.2 38,619 - HMPREF1058_RS00600 0.82 -0.1 38,728 - -0.1 38,893 + -1.0 38,960 + -0.2 39,054 + HMPREF1058_RS00595 0.16 +0.6 39,085 - HMPREF1058_RS00595 0.22 -0.1 39,096 + HMPREF1058_RS00595 0.24 -0.3 39,124 + HMPREF1058_RS00595 0.28 -0.6 39,128 + HMPREF1058_RS00595 0.29 -0.2 39,129 - HMPREF1058_RS00595 0.29 -2.0 39,326 + HMPREF1058_RS00595 0.62 -1.2 39,327 - HMPREF1058_RS00595 0.62 -2.6 39,548 - +2.4 39,548 - -0.2 39,556 + -0.1 39,557 - +0.1 39,638 + -0.2 39,639 - +0.4 39,639 - -0.2 39,705 + -0.6 39,801 - HMPREF1058_RS00590 0.20 -1.6 39,855 + HMPREF1058_RS00590 0.26 +2.0 40,024 - HMPREF1058_RS00590 0.47 -2.5 40,029 + HMPREF1058_RS00590 0.48 -0.6 40,115 + HMPREF1058_RS00590 0.58 -0.4 40,120 - HMPREF1058_RS00590 0.59 -1.3 40,133 + HMPREF1058_RS00590 0.60 -3.2 40,134 - HMPREF1058_RS00590 0.60 -1.7 40,318 + HMPREF1058_RS00590 0.83 -0.0 40,442 - -2.1 40,444 + -0.6 40,444 + -0.5 40,464 - -0.7 40,476 + -0.7 40,476 + -1.7 40,476 + -1.7 40,477 - +1.5
Or see this region's nucleotide sequence