Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00570 and HMPREF1058_RS00565 are separated by 4 nucleotides HMPREF1058_RS00565 and HMPREF1058_RS00560 are separated by 294 nucleotides HMPREF1058_RS00560 and HMPREF1058_RS00555 are separated by 5 nucleotides
HMPREF1058_RS00570: HMPREF1058_RS00570 - HD domain-containing protein, at 49,403 to 50,884
_RS00570
HMPREF1058_RS00565: HMPREF1058_RS00565 - hemolysin III family protein, at 50,889 to 51,524
_RS00565
HMPREF1058_RS00560: HMPREF1058_RS00560 - anaerobic ribonucleoside triphosphate reductase, at 51,819 to 54,095
_RS00560
HMPREF1058_RS00555: HMPREF1058_RS00555 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 54,101 to 54,559
_RS00555
Position (kb) 51
52
53
54
55 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 50.865 kb on + strand at 50.865 kb on + strand at 50.897 kb on - strand at 50.956 kb on + strand, within HMPREF1058_RS00565 at 50.957 kb on - strand, within HMPREF1058_RS00565 at 51.041 kb on - strand, within HMPREF1058_RS00565 at 51.060 kb on + strand, within HMPREF1058_RS00565 at 51.061 kb on - strand, within HMPREF1058_RS00565 at 51.162 kb on + strand, within HMPREF1058_RS00565 at 51.162 kb on + strand, within HMPREF1058_RS00565 at 51.221 kb on + strand, within HMPREF1058_RS00565 at 51.259 kb on + strand, within HMPREF1058_RS00565 at 51.307 kb on - strand, within HMPREF1058_RS00565 at 51.308 kb on + strand, within HMPREF1058_RS00565 at 51.308 kb on + strand at 51.309 kb on - strand, within HMPREF1058_RS00565 at 51.309 kb on - strand, within HMPREF1058_RS00565 at 51.311 kb on - strand, within HMPREF1058_RS00565 at 51.374 kb on + strand, within HMPREF1058_RS00565 at 51.405 kb on + strand, within HMPREF1058_RS00565 at 51.406 kb on - strand, within HMPREF1058_RS00565 at 51.406 kb on - strand, within HMPREF1058_RS00565 at 51.449 kb on + strand, within HMPREF1058_RS00565 at 51.754 kb on + strand at 51.754 kb on + strand at 52.043 kb on - strand at 52.065 kb on + strand, within HMPREF1058_RS00560 at 52.068 kb on - strand, within HMPREF1058_RS00560 at 52.251 kb on - strand, within HMPREF1058_RS00560 at 52.254 kb on + strand at 52.403 kb on + strand, within HMPREF1058_RS00560 at 52.562 kb on - strand, within HMPREF1058_RS00560 at 52.780 kb on + strand, within HMPREF1058_RS00560 at 52.878 kb on + strand, within HMPREF1058_RS00560 at 53.036 kb on + strand, within HMPREF1058_RS00560 at 53.150 kb on - strand, within HMPREF1058_RS00560 at 53.993 kb on + strand at 53.993 kb on + strand at 53.994 kb on - strand at 53.994 kb on - strand at 54.594 kb on + strand at 54.596 kb on + strand at 54.733 kb on + strand at 54.755 kb on + strand at 54.755 kb on + strand at 54.756 kb on - strand at 54.764 kb on - strand at 54.769 kb on + strand at 54.797 kb on + strand at 54.798 kb on - strand at 54.798 kb on - strand at 54.804 kb on - strand at 54.806 kb on + strand at 54.814 kb on - strand at 54.855 kb on + strand at 54.856 kb on - strand at 54.859 kb on + strand at 54.859 kb on + strand at 54.997 kb on - strand at 55.029 kb on - strand at 55.030 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 50,865 + +0.4 50,865 + +1.1 50,897 - -0.9 50,956 + HMPREF1058_RS00565 0.11 +0.3 50,957 - HMPREF1058_RS00565 0.11 -0.4 51,041 - HMPREF1058_RS00565 0.24 +0.1 51,060 + HMPREF1058_RS00565 0.27 -0.6 51,061 - HMPREF1058_RS00565 0.27 -0.1 51,162 + HMPREF1058_RS00565 0.43 -0.6 51,162 + HMPREF1058_RS00565 0.43 -2.3 51,221 + HMPREF1058_RS00565 0.52 -0.2 51,259 + HMPREF1058_RS00565 0.58 -0.4 51,307 - HMPREF1058_RS00565 0.66 -0.7 51,308 + HMPREF1058_RS00565 0.66 -1.1 51,308 + +1.6 51,309 - HMPREF1058_RS00565 0.66 +0.2 51,309 - HMPREF1058_RS00565 0.66 -0.7 51,311 - HMPREF1058_RS00565 0.66 +0.6 51,374 + HMPREF1058_RS00565 0.76 +0.2 51,405 + HMPREF1058_RS00565 0.81 +0.0 51,406 - HMPREF1058_RS00565 0.81 -1.7 51,406 - HMPREF1058_RS00565 0.81 +1.4 51,449 + HMPREF1058_RS00565 0.88 -0.1 51,754 + +2.2 51,754 + -1.1 52,043 - -1.0 52,065 + HMPREF1058_RS00560 0.11 -1.1 52,068 - HMPREF1058_RS00560 0.11 -0.4 52,251 - HMPREF1058_RS00560 0.19 -0.0 52,254 + -1.5 52,403 + HMPREF1058_RS00560 0.26 +0.5 52,562 - HMPREF1058_RS00560 0.33 +0.2 52,780 + HMPREF1058_RS00560 0.42 -0.2 52,878 + HMPREF1058_RS00560 0.47 -1.2 53,036 + HMPREF1058_RS00560 0.53 -1.1 53,150 - HMPREF1058_RS00560 0.58 -1.4 53,993 + -0.7 53,993 + -1.2 53,994 - -1.4 53,994 - -1.9 54,594 + -1.7 54,596 + +0.1 54,733 + +3.6 54,755 + +0.4 54,755 + -0.0 54,756 - -0.4 54,764 - +1.3 54,769 + +0.4 54,797 + -0.3 54,798 - +0.4 54,798 - +0.8 54,804 - -0.8 54,806 + -0.3 54,814 - -0.1 54,855 + -0.1 54,856 - -0.5 54,859 + +0.0 54,859 + -0.6 54,997 - -0.0 55,029 - -0.1 55,030 + -0.3
Or see this region's nucleotide sequence