Experiment: pectate 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00125 and HMPREF1058_RS00120 are separated by 15 nucleotides HMPREF1058_RS00120 and HMPREF1058_RS00115 overlap by 4 nucleotides HMPREF1058_RS00115 and HMPREF1058_RS00110 overlap by 23 nucleotides
HMPREF1058_RS00125: HMPREF1058_RS00125 - glycoside hydrolase family 28 protein, at 53,451 to 54,875
_RS00125
HMPREF1058_RS00120: HMPREF1058_RS00120 - hypothetical protein, at 54,891 to 55,694
_RS00120
HMPREF1058_RS00115: HMPREF1058_RS00115 - DUF4450 domain-containing protein, at 55,691 to 56,389
_RS00115
HMPREF1058_RS00110: HMPREF1058_RS00110 - right-handed parallel beta-helix repeat-containing protein, at 56,367 to 57,851
_RS00110
Position (kb) 55
56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 54.709 kb on + strand, within HMPREF1058_RS00125 at 54.710 kb on - strand, within HMPREF1058_RS00125 at 54.777 kb on - strand at 54.850 kb on - strand at 54.862 kb on - strand at 54.862 kb on - strand at 54.892 kb on + strand at 54.892 kb on + strand at 54.907 kb on - strand at 54.907 kb on - strand at 54.921 kb on + strand at 54.940 kb on + strand at 54.941 kb on - strand at 54.941 kb on - strand at 54.948 kb on - strand at 54.948 kb on - strand at 55.063 kb on - strand, within HMPREF1058_RS00120 at 55.106 kb on - strand, within HMPREF1058_RS00120 at 55.151 kb on - strand, within HMPREF1058_RS00120 at 55.212 kb on - strand, within HMPREF1058_RS00120 at 55.547 kb on + strand, within HMPREF1058_RS00120 at 55.548 kb on - strand, within HMPREF1058_RS00120 at 55.548 kb on - strand, within HMPREF1058_RS00120 at 55.591 kb on - strand, within HMPREF1058_RS00120 at 55.676 kb on - strand at 55.747 kb on + strand at 55.806 kb on - strand, within HMPREF1058_RS00115 at 55.873 kb on + strand, within HMPREF1058_RS00115 at 55.953 kb on + strand, within HMPREF1058_RS00115 at 55.953 kb on + strand, within HMPREF1058_RS00115 at 55.954 kb on - strand at 55.960 kb on + strand, within HMPREF1058_RS00115 at 56.117 kb on - strand, within HMPREF1058_RS00115 at 56.125 kb on + strand, within HMPREF1058_RS00115 at 56.145 kb on - strand, within HMPREF1058_RS00115 at 56.145 kb on - strand, within HMPREF1058_RS00115 at 56.145 kb on - strand, within HMPREF1058_RS00115 at 56.370 kb on + strand at 56.390 kb on - strand at 56.448 kb on + strand at 56.512 kb on - strand at 56.583 kb on - strand, within HMPREF1058_RS00110 at 56.622 kb on + strand, within HMPREF1058_RS00110 at 56.622 kb on + strand, within HMPREF1058_RS00110 at 56.727 kb on - strand, within HMPREF1058_RS00110 at 56.732 kb on - strand, within HMPREF1058_RS00110 at 56.732 kb on - strand, within HMPREF1058_RS00110 at 56.735 kb on + strand, within HMPREF1058_RS00110 at 56.735 kb on + strand, within HMPREF1058_RS00110 at 56.735 kb on + strand, within HMPREF1058_RS00110 at 56.736 kb on - strand, within HMPREF1058_RS00110 at 56.736 kb on - strand, within HMPREF1058_RS00110 at 56.806 kb on + strand, within HMPREF1058_RS00110 at 56.887 kb on + strand, within HMPREF1058_RS00110 at 57.057 kb on + strand, within HMPREF1058_RS00110 at 57.104 kb on + strand, within HMPREF1058_RS00110 at 57.138 kb on - strand, within HMPREF1058_RS00110 at 57.165 kb on - strand, within HMPREF1058_RS00110 at 57.165 kb on - strand, within HMPREF1058_RS00110 at 57.178 kb on + strand, within HMPREF1058_RS00110 at 57.234 kb on + strand, within HMPREF1058_RS00110 at 57.237 kb on - strand, within HMPREF1058_RS00110 at 57.237 kb on - strand, within HMPREF1058_RS00110 at 57.260 kb on + strand, within HMPREF1058_RS00110 at 57.341 kb on + strand, within HMPREF1058_RS00110 at 57.342 kb on - strand, within HMPREF1058_RS00110 at 57.375 kb on - strand, within HMPREF1058_RS00110 at 57.389 kb on + strand, within HMPREF1058_RS00110
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/ml (C) remove 54,709 + HMPREF1058_RS00125 0.88 +0.4 54,710 - HMPREF1058_RS00125 0.88 -0.9 54,777 - -0.5 54,850 - +0.5 54,862 - +0.5 54,862 - +1.2 54,892 + -0.6 54,892 + -0.3 54,907 - +0.2 54,907 - +0.0 54,921 + -1.0 54,940 + +0.3 54,941 - -0.5 54,941 - +0.4 54,948 - +0.6 54,948 - -1.1 55,063 - HMPREF1058_RS00120 0.21 -0.2 55,106 - HMPREF1058_RS00120 0.27 -0.7 55,151 - HMPREF1058_RS00120 0.32 -1.1 55,212 - HMPREF1058_RS00120 0.40 -0.2 55,547 + HMPREF1058_RS00120 0.82 -0.2 55,548 - HMPREF1058_RS00120 0.82 -0.2 55,548 - HMPREF1058_RS00120 0.82 -0.1 55,591 - HMPREF1058_RS00120 0.87 -0.6 55,676 - +0.2 55,747 + -0.3 55,806 - HMPREF1058_RS00115 0.16 -1.5 55,873 + HMPREF1058_RS00115 0.26 -1.0 55,953 + HMPREF1058_RS00115 0.37 -1.1 55,953 + HMPREF1058_RS00115 0.37 -0.3 55,954 - +1.0 55,960 + HMPREF1058_RS00115 0.38 -1.9 56,117 - HMPREF1058_RS00115 0.61 -0.2 56,125 + HMPREF1058_RS00115 0.62 -0.3 56,145 - HMPREF1058_RS00115 0.65 -0.8 56,145 - HMPREF1058_RS00115 0.65 -0.0 56,145 - HMPREF1058_RS00115 0.65 -1.0 56,370 + -1.3 56,390 - -0.1 56,448 + -1.3 56,512 - -1.0 56,583 - HMPREF1058_RS00110 0.15 -0.1 56,622 + HMPREF1058_RS00110 0.17 -0.5 56,622 + HMPREF1058_RS00110 0.17 -0.4 56,727 - HMPREF1058_RS00110 0.24 +1.7 56,732 - HMPREF1058_RS00110 0.25 +0.1 56,732 - HMPREF1058_RS00110 0.25 -2.8 56,735 + HMPREF1058_RS00110 0.25 -0.2 56,735 + HMPREF1058_RS00110 0.25 +0.2 56,735 + HMPREF1058_RS00110 0.25 +1.6 56,736 - HMPREF1058_RS00110 0.25 -0.4 56,736 - HMPREF1058_RS00110 0.25 +2.4 56,806 + HMPREF1058_RS00110 0.30 -0.7 56,887 + HMPREF1058_RS00110 0.35 -1.0 57,057 + HMPREF1058_RS00110 0.46 -0.2 57,104 + HMPREF1058_RS00110 0.50 -0.2 57,138 - HMPREF1058_RS00110 0.52 -1.7 57,165 - HMPREF1058_RS00110 0.54 -0.9 57,165 - HMPREF1058_RS00110 0.54 +0.1 57,178 + HMPREF1058_RS00110 0.55 +0.8 57,234 + HMPREF1058_RS00110 0.58 -0.4 57,237 - HMPREF1058_RS00110 0.59 -0.4 57,237 - HMPREF1058_RS00110 0.59 -0.7 57,260 + HMPREF1058_RS00110 0.60 -0.9 57,341 + HMPREF1058_RS00110 0.66 -0.9 57,342 - HMPREF1058_RS00110 0.66 -0.1 57,375 - HMPREF1058_RS00110 0.68 +0.3 57,389 + HMPREF1058_RS00110 0.69 -0.5
Or see this region's nucleotide sequence