Experiment: Rhamnogalacturonan I from potato pectic fiber 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03855 and HMPREF1058_RS03850 are separated by 23 nucleotides HMPREF1058_RS03850 and HMPREF1058_RS03845 are separated by 12 nucleotides
HMPREF1058_RS03855: HMPREF1058_RS03855 - ABC transporter ATP-binding protein, at 170,888 to 172,342
_RS03855
HMPREF1058_RS03850: HMPREF1058_RS03850 - ABC transporter permease, at 172,366 to 173,472
_RS03850
HMPREF1058_RS03845: HMPREF1058_RS03845 - ABC transporter permease, at 173,485 to 174,591
_RS03845
Position (kb) 172
173
174 Strain fitness (log2 ratio) -2
-1
0
1
2 at 171.622 kb on - strand, within HMPREF1058_RS03855 at 171.714 kb on + strand, within HMPREF1058_RS03855 at 171.715 kb on - strand, within HMPREF1058_RS03855 at 171.790 kb on + strand, within HMPREF1058_RS03855 at 171.791 kb on - strand, within HMPREF1058_RS03855 at 171.791 kb on - strand, within HMPREF1058_RS03855 at 171.850 kb on + strand, within HMPREF1058_RS03855 at 171.850 kb on + strand, within HMPREF1058_RS03855 at 171.851 kb on - strand, within HMPREF1058_RS03855 at 172.188 kb on - strand, within HMPREF1058_RS03855 at 172.231 kb on - strand at 172.294 kb on + strand at 172.443 kb on - strand at 172.443 kb on - strand at 172.443 kb on - strand at 172.457 kb on + strand at 172.506 kb on - strand, within HMPREF1058_RS03850 at 172.598 kb on + strand, within HMPREF1058_RS03850 at 172.599 kb on - strand, within HMPREF1058_RS03850 at 172.599 kb on - strand, within HMPREF1058_RS03850 at 172.603 kb on + strand, within HMPREF1058_RS03850 at 172.603 kb on + strand, within HMPREF1058_RS03850 at 172.604 kb on - strand, within HMPREF1058_RS03850 at 172.620 kb on - strand, within HMPREF1058_RS03850 at 172.765 kb on + strand, within HMPREF1058_RS03850 at 172.765 kb on + strand, within HMPREF1058_RS03850 at 172.766 kb on - strand, within HMPREF1058_RS03850 at 172.780 kb on - strand, within HMPREF1058_RS03850 at 173.021 kb on + strand, within HMPREF1058_RS03850 at 173.034 kb on - strand, within HMPREF1058_RS03850 at 173.038 kb on + strand, within HMPREF1058_RS03850 at 173.039 kb on - strand, within HMPREF1058_RS03850 at 173.039 kb on - strand, within HMPREF1058_RS03850 at 173.039 kb on - strand, within HMPREF1058_RS03850 at 173.039 kb on - strand, within HMPREF1058_RS03850 at 173.039 kb on - strand, within HMPREF1058_RS03850 at 173.094 kb on - strand, within HMPREF1058_RS03850 at 173.096 kb on + strand, within HMPREF1058_RS03850 at 173.335 kb on + strand, within HMPREF1058_RS03850 at 173.406 kb on - strand at 173.406 kb on - strand at 173.409 kb on + strand at 173.409 kb on + strand at 173.494 kb on + strand at 173.495 kb on - strand at 173.495 kb on - strand at 173.498 kb on + strand at 173.571 kb on + strand at 173.705 kb on + strand, within HMPREF1058_RS03845 at 173.705 kb on + strand, within HMPREF1058_RS03845 at 173.706 kb on - strand, within HMPREF1058_RS03845 at 173.723 kb on - strand, within HMPREF1058_RS03845 at 173.723 kb on - strand, within HMPREF1058_RS03845 at 173.878 kb on + strand, within HMPREF1058_RS03845 at 173.889 kb on + strand, within HMPREF1058_RS03845 at 173.890 kb on - strand, within HMPREF1058_RS03845 at 173.957 kb on + strand, within HMPREF1058_RS03845 at 174.000 kb on + strand, within HMPREF1058_RS03845 at 174.001 kb on - strand, within HMPREF1058_RS03845 at 174.006 kb on - strand, within HMPREF1058_RS03845 at 174.006 kb on - strand, within HMPREF1058_RS03845 at 174.006 kb on - strand, within HMPREF1058_RS03845 at 174.010 kb on - strand, within HMPREF1058_RS03845 at 174.316 kb on + strand, within HMPREF1058_RS03845 at 174.408 kb on + strand, within HMPREF1058_RS03845
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan I from potato pectic fiber 2.5 mg/ml (C) remove 171,622 - HMPREF1058_RS03855 0.50 -0.7 171,714 + HMPREF1058_RS03855 0.57 -1.8 171,715 - HMPREF1058_RS03855 0.57 -0.9 171,790 + HMPREF1058_RS03855 0.62 -0.8 171,791 - HMPREF1058_RS03855 0.62 +0.5 171,791 - HMPREF1058_RS03855 0.62 -0.1 171,850 + HMPREF1058_RS03855 0.66 +0.7 171,850 + HMPREF1058_RS03855 0.66 +1.4 171,851 - HMPREF1058_RS03855 0.66 +1.3 172,188 - HMPREF1058_RS03855 0.89 +1.6 172,231 - -0.3 172,294 + -0.8 172,443 - +0.0 172,443 - +0.4 172,443 - +0.1 172,457 + +0.2 172,506 - HMPREF1058_RS03850 0.13 +2.0 172,598 + HMPREF1058_RS03850 0.21 -0.5 172,599 - HMPREF1058_RS03850 0.21 -1.2 172,599 - HMPREF1058_RS03850 0.21 -1.8 172,603 + HMPREF1058_RS03850 0.21 -0.6 172,603 + HMPREF1058_RS03850 0.21 -0.9 172,604 - HMPREF1058_RS03850 0.21 +1.0 172,620 - HMPREF1058_RS03850 0.23 +0.1 172,765 + HMPREF1058_RS03850 0.36 -1.3 172,765 + HMPREF1058_RS03850 0.36 -2.2 172,766 - HMPREF1058_RS03850 0.36 -1.8 172,780 - HMPREF1058_RS03850 0.37 -0.9 173,021 + HMPREF1058_RS03850 0.59 -0.9 173,034 - HMPREF1058_RS03850 0.60 -0.2 173,038 + HMPREF1058_RS03850 0.61 +0.4 173,039 - HMPREF1058_RS03850 0.61 -1.7 173,039 - HMPREF1058_RS03850 0.61 -2.1 173,039 - HMPREF1058_RS03850 0.61 +2.0 173,039 - HMPREF1058_RS03850 0.61 -0.3 173,039 - HMPREF1058_RS03850 0.61 -0.5 173,094 - HMPREF1058_RS03850 0.66 -2.6 173,096 + HMPREF1058_RS03850 0.66 +0.6 173,335 + HMPREF1058_RS03850 0.88 +0.6 173,406 - +1.0 173,406 - +1.6 173,409 + +1.4 173,409 + +0.4 173,494 + +0.0 173,495 - +0.4 173,495 - -0.6 173,498 + -0.3 173,571 + -0.1 173,705 + HMPREF1058_RS03845 0.20 +0.4 173,705 + HMPREF1058_RS03845 0.20 +2.1 173,706 - HMPREF1058_RS03845 0.20 -1.3 173,723 - HMPREF1058_RS03845 0.21 -0.7 173,723 - HMPREF1058_RS03845 0.21 +0.4 173,878 + HMPREF1058_RS03845 0.36 -0.1 173,889 + HMPREF1058_RS03845 0.36 -0.9 173,890 - HMPREF1058_RS03845 0.37 +0.1 173,957 + HMPREF1058_RS03845 0.43 +0.8 174,000 + HMPREF1058_RS03845 0.47 -1.7 174,001 - HMPREF1058_RS03845 0.47 -0.4 174,006 - HMPREF1058_RS03845 0.47 -1.7 174,006 - HMPREF1058_RS03845 0.47 +0.2 174,006 - HMPREF1058_RS03845 0.47 +1.2 174,010 - HMPREF1058_RS03845 0.47 -0.3 174,316 + HMPREF1058_RS03845 0.75 -0.5 174,408 + HMPREF1058_RS03845 0.83 +0.7
Or see this region's nucleotide sequence