Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS23365

Experiment: Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
1,636,267	+				+0.1
1,636,267	+				-0.0
1,636,268	-				-1.7
1,636,665	+		RS_RS23360	0.13	+0.5
1,636,665	+		RS_RS23360	0.13	-0.5
1,636,665	+		RS_RS23360	0.13	-0.9
1,636,666	-		RS_RS23360	0.13	+0.4
1,636,666	-		RS_RS23360	0.13	-0.9
1,636,666	-		RS_RS23360	0.13	+1.0
1,636,770	+		RS_RS23360	0.35	-2.3
1,636,770	+		RS_RS23360	0.35	-0.5
1,636,770	+		RS_RS23360	0.35	-0.1
1,636,771	-		RS_RS23360	0.36	+0.4
1,636,780	-		RS_RS23360	0.38	-1.7
1,636,780	-		RS_RS23360	0.38	-1.2
1,636,780	-		RS_RS23360	0.38	-0.3
1,636,782	+		RS_RS23360	0.38	+0.7
1,636,782	+		RS_RS23360	0.38	+2.5
1,636,783	-		RS_RS23360	0.38	+1.5
1,636,783	-		RS_RS23360	0.38	+0.1
1,636,857	+		RS_RS23360	0.54	-0.1
1,636,857	+		RS_RS23360	0.54	-0.5
1,636,857	+		RS_RS23360	0.54	-0.4
1,636,879	-		RS_RS23360	0.59	-2.1
1,636,879	-		RS_RS23360	0.59	-0.6
1,636,947	+		RS_RS23360	0.73	-0.3
1,636,947	+		RS_RS23360	0.73	-3.2
1,636,947	+		RS_RS23360	0.73	-1.0
1,636,948	-		RS_RS23360	0.74	-1.1
1,636,948	-		RS_RS23360	0.74	-0.9
1,636,948	-		RS_RS23360	0.74	-1.6
1,636,948	-		RS_RS23360	0.74	+0.9
1,636,948	-		RS_RS23360	0.74	+0.0
1,636,957	-		RS_RS23360	0.75	-1.3
1,637,252	+				-0.8
1,637,253	-				+0.2
1,637,253	-				+1.8
1,637,333	+				-1.4
1,637,429	+		RS_RS23365	0.11	-0.5
1,637,429	+		RS_RS23365	0.11	-1.1
1,637,429	+		RS_RS23365	0.11	-0.2
1,637,430	-		RS_RS23365	0.11	-1.2
1,637,430	-		RS_RS23365	0.11	+1.5
1,637,430	-		RS_RS23365	0.11	+0.3
1,637,430	-		RS_RS23365	0.11	+0.0
1,637,430	-		RS_RS23365	0.11	-0.0
1,637,430	-		RS_RS23365	0.11	-0.2
1,637,444	+		RS_RS23365	0.11	-0.3
1,637,445	-		RS_RS23365	0.11	+0.0
1,637,445	-		RS_RS23365	0.11	-0.9
1,637,661	-		RS_RS23365	0.18	-0.7
1,637,661	-		RS_RS23365	0.18	-0.0
1,637,721	-		RS_RS23365	0.19	+0.5
1,637,745	-		RS_RS23365	0.20	-0.4
1,637,745	-		RS_RS23365	0.20	-1.0
1,637,972	+		RS_RS23365	0.27	-0.5
1,637,973	-		RS_RS23365	0.27	+1.2
1,637,973	-		RS_RS23365	0.27	+1.1
1,637,973	-		RS_RS23365	0.27	-0.5
1,637,978	+		RS_RS23365	0.27	+0.5
1,637,979	-		RS_RS23365	0.27	+0.2
1,637,979	-		RS_RS23365	0.27	-0.8
1,637,979	-		RS_RS23365	0.27	-0.0
1,638,020	+		RS_RS23365	0.28	-1.0
1,638,020	+		RS_RS23365	0.28	-0.3
1,638,021	-		RS_RS23365	0.28	-0.1
1,638,021	-		RS_RS23365	0.28	+1.3
1,638,086	+		RS_RS23365	0.30	+0.9
1,638,089	+		RS_RS23365	0.30	-0.4
1,638,225	-		RS_RS23365	0.35	+2.4
1,638,229	-		RS_RS23365	0.35	+0.5
1,638,229	-		RS_RS23365	0.35	-0.5
1,638,229	-		RS_RS23365	0.35	-0.2
1,638,239	+		RS_RS23365	0.35	+0.2
1,638,276	+		RS_RS23365	0.36	+1.5
1,638,277	-		RS_RS23365	0.36	+0.1
1,638,356	+		RS_RS23365	0.38	-0.6
1,638,356	+		RS_RS23365	0.38	+1.5
1,638,356	+		RS_RS23365	0.38	-0.1
1,638,357	-		RS_RS23365	0.38	-0.3
1,638,357	-		RS_RS23365	0.38	+1.5
1,638,458	+		RS_RS23365	0.41	+0.0
1,638,458	+		RS_RS23365	0.41	+1.1
1,638,458	+		RS_RS23365	0.41	-1.0
1,638,459	-		RS_RS23365	0.42	-0.1
1,638,459	-		RS_RS23365	0.42	-0.4
1,638,461	+		RS_RS23365	0.42	+0.2
1,638,495	-		RS_RS23365	0.43	+0.4
1,638,578	+		RS_RS23365	0.45	-0.8
1,638,578	+		RS_RS23365	0.45	-0.9
1,638,578	+		RS_RS23365	0.45	+0.2
1,638,579	-		RS_RS23365	0.45	-0.5
1,638,579	-		RS_RS23365	0.45	-0.1
1,638,579	-		RS_RS23365	0.45	+0.5
1,638,579	-		RS_RS23365	0.45	-0.3
1,638,645	-		RS_RS23365	0.47	-1.6
1,638,692	+		RS_RS23365	0.49	+1.5
1,638,692	+		RS_RS23365	0.49	+0.5
1,638,692	+		RS_RS23365	0.49	+0.6
1,638,693	-		RS_RS23365	0.49	+0.1
1,638,693	-		RS_RS23365	0.49	+0.3
1,638,693	-		RS_RS23365	0.49	-0.4
1,638,717	-		RS_RS23365	0.49	-0.4
1,638,717	-		RS_RS23365	0.49	-0.8
1,638,737	+		RS_RS23365	0.50	-0.0
1,638,737	+		RS_RS23365	0.50	+0.3
1,638,737	+		RS_RS23365	0.50	+0.4
1,638,737	+		RS_RS23365	0.50	+0.0
1,638,738	-		RS_RS23365	0.50	-0.4
1,638,801	-		RS_RS23365	0.52	-1.7
1,638,801	-		RS_RS23365	0.52	+1.3
1,638,875	+		RS_RS23365	0.54	-2.4
1,638,920	+		RS_RS23365	0.55	-1.6
1,638,921	-		RS_RS23365	0.55	-0.7
1,639,217	+		RS_RS23365	0.64	+1.6
1,639,217	+		RS_RS23365	0.64	-0.1
1,639,217	+		RS_RS23365	0.64	+0.2
1,639,218	-		RS_RS23365	0.64	-0.1
1,639,220	+		RS_RS23365	0.64	-0.4
1,639,220	+		RS_RS23365	0.64	-1.6
1,639,220	+		RS_RS23365	0.64	+1.5
1,639,457	+		RS_RS23365	0.71	+0.2
1,639,499	+		RS_RS23365	0.73	-1.8
1,639,499	+		RS_RS23365	0.73	-0.1
1,639,499	+		RS_RS23365	0.73	-0.5
1,639,500	-		RS_RS23365	0.73	-0.2
1,639,500	-		RS_RS23365	0.73	-0.6
1,639,500	-		RS_RS23365	0.73	-0.6
1,639,586	+		RS_RS23365	0.75	-0.6
1,639,586	+		RS_RS23365	0.75	+0.5
1,639,586	+		RS_RS23365	0.75	-0.3
1,639,587	-		RS_RS23365	0.75	-0.8
1,639,587	-		RS_RS23365	0.75	+0.3
1,639,592	+		RS_RS23365	0.75	+1.4
1,639,592	+		RS_RS23365	0.75	-1.0
1,639,592	+		RS_RS23365	0.75	-0.1
1,639,593	-		RS_RS23365	0.76	-0.6
1,639,593	-		RS_RS23365	0.76	+0.1
1,639,593	-		RS_RS23365	0.76	+1.0
1,639,599	-		RS_RS23365	0.76	+0.5
1,639,649	+		RS_RS23365	0.77	+1.5
1,639,650	-		RS_RS23365	0.77	-0.0
1,639,718	+		RS_RS23365	0.79	-0.2
1,639,719	-		RS_RS23365	0.79	+3.7
1,639,721	+		RS_RS23365	0.79	-0.0
1,639,722	-		RS_RS23365	0.79	+0.6
1,639,730	+		RS_RS23365	0.80	+0.1
1,639,866	+		RS_RS23365	0.84	+0.5
1,639,867	-		RS_RS23365	0.84	+3.8
1,639,868	+		RS_RS23365	0.84	+1.3
1,639,889	+		RS_RS23365	0.84	-2.5
1,639,889	+		RS_RS23365	0.84	-0.5
1,639,889	+		RS_RS23365	0.84	-0.5
1,639,889	+		RS_RS23365	0.84	-0.1
1,640,006	+		RS_RS23365	0.88	+0.4
1,640,006	+		RS_RS23365	0.88	-0.6
1,640,007	-		RS_RS23365	0.88	-1.5
1,640,007	-		RS_RS23365	0.88	-0.4
1,640,021	+		RS_RS23365	0.88	+1.5
1,640,127	+				-0.8
1,640,214	-				+1.7
1,640,216	+				-1.5
1,640,217	-				+0.1
1,640,217	-				-0.4
1,640,410	+				-0.2
1,640,411	-				+1.6
1,640,449	+				-1.1
1,640,449	+				-0.9
1,640,449	+				-0.5
1,640,449	+				+1.1
1,640,450	-				+0.3
1,640,513	-		RS_RS23370	0.18	+0.3
1,640,548	+		RS_RS23370	0.24	-0.3
1,640,549	-		RS_RS23370	0.24	+0.3
1,640,549	-		RS_RS23370	0.24	-2.2
1,640,557	+		RS_RS23370	0.25	-0.6
1,640,557	+		RS_RS23370	0.25	-0.1
1,640,557	+		RS_RS23370	0.25	-0.9
1,640,558	-		RS_RS23370	0.26	-1.2
1,640,558	-		RS_RS23370	0.26	+0.5
1,640,578	+		RS_RS23370	0.29	-2.4
1,640,578	+		RS_RS23370	0.29	-0.3
1,640,642	-		RS_RS23370	0.40	-1.5
1,640,938	+				+1.5
1,640,939	-				-1.3
1,640,939	-				+0.2
1,640,939	-				+0.3
1,641,144	+		RS_RS23375	0.21	+1.4
1,641,144	+		RS_RS23375	0.21	-0.3
1,641,144	+		RS_RS23375	0.21	+0.7
1,641,144	+		RS_RS23375	0.21	-1.3
1,641,144	+		RS_RS23375	0.21	+0.9
1,641,144	+		RS_RS23375	0.21	-1.1
1,641,144	+		RS_RS23375	0.21	-0.7
1,641,144	+		RS_RS23375	0.21	-1.9
1,641,144	+		RS_RS23375	0.21	-1.4
1,641,144	+		RS_RS23375	0.21	+1.8
1,641,145	-		RS_RS23375	0.21	+0.7
1,641,145	-		RS_RS23375	0.21	-0.6
1,641,145	-		RS_RS23375	0.21	-2.2
1,641,145	-		RS_RS23375	0.21	-0.2
1,641,145	-		RS_RS23375	0.21	+0.4
1,641,145	-		RS_RS23375	0.21	-0.6
1,641,145	-		RS_RS23375	0.21	+0.4
1,641,145	-		RS_RS23375	0.21	-0.6
1,641,145	-		RS_RS23375	0.21	+0.3
1,641,145	-		RS_RS23375	0.21	+0.2
1,641,156	+		RS_RS23375	0.22	-0.2
1,641,157	-		RS_RS23375	0.23	+1.0
1,641,173	-		RS_RS23375	0.25	+0.5
1,641,183	+		RS_RS23375	0.26	+0.4
1,641,183	+		RS_RS23375	0.26	-1.9
1,641,184	-		RS_RS23375	0.26	+0.2
1,641,184	-		RS_RS23375	0.26	+3.3
1,641,184	-		RS_RS23375	0.26	+1.1
1,641,288	+		RS_RS23375	0.40	+1.7