Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS08235

Experiment: Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS08230 and RS_RS08235 are separated by 382 nucleotidesRS_RS08235 and RS_RS08240 are separated by 230 nucleotides RS_RS08230: RS_RS08230 - beta-ketoacyl-ACP reductase, at 1,754,514 to 1,755,254 _RS08230 RS_RS08235: RS_RS08235 - polyhydroxyalkanoate synthesis repressor PhaR, at 1,755,637 to 1,756,191 _RS08235 RS_RS08240: RS_RS08240 - tRNA-dihydrouridine synthase C, at 1,756,422 to 1,757,402 _RS08240 Position (kb) 1755 1756 1757Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1754.970 kb on + strand, within RS_RS08230at 1754.971 kb on - strand, within RS_RS08230at 1754.971 kb on - strand, within RS_RS08230at 1755.066 kb on + strand, within RS_RS08230at 1755.698 kb on - strand, within RS_RS08235at 1755.929 kb on - strand, within RS_RS08235at 1755.998 kb on - strand, within RS_RS08235at 1756.082 kb on - strand, within RS_RS08235at 1756.082 kb on - strand, within RS_RS08235at 1756.189 kb on + strandat 1756.292 kb on - strandat 1756.292 kb on - strandat 1756.560 kb on + strand, within RS_RS08240at 1756.561 kb on - strand, within RS_RS08240at 1756.863 kb on - strand, within RS_RS08240

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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1,754,970 + RS_RS08230 0.62 +1.4
1,754,971 - RS_RS08230 0.62 -1.4
1,754,971 - RS_RS08230 0.62 +0.0
1,755,066 + RS_RS08230 0.74 -0.2
1,755,698 - RS_RS08235 0.11 -3.0
1,755,929 - RS_RS08235 0.53 -1.2
1,755,998 - RS_RS08235 0.65 -1.8
1,756,082 - RS_RS08235 0.80 -3.0
1,756,082 - RS_RS08235 0.80 -0.2
1,756,189 + +0.1
1,756,292 - -0.8
1,756,292 - +0.1
1,756,560 + RS_RS08240 0.14 +2.2
1,756,561 - RS_RS08240 0.14 +1.5
1,756,863 - RS_RS08240 0.45 -0.6

Or see this region's nucleotide sequence