Experiment: Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS05985 and RS_RS05990 are separated by 78 nucleotides RS_RS05990 and RS_RS05995 are separated by 32 nucleotides
RS_RS05985: RS_RS05985 - carbohydrate porin, at 1,263,160 to 1,264,665
_RS05985
RS_RS05990: RS_RS05990 - GntR family transcriptional regulator, at 1,264,744 to 1,265,664
_RS05990
RS_RS05995: RS_RS05995 - CoA transferase, at 1,265,697 to 1,266,905
_RS05995
Position (kb) 1264
1265
1266 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1263.761 kb on + strand, within RS_RS05985 at 1263.762 kb on - strand, within RS_RS05985 at 1263.771 kb on - strand, within RS_RS05985 at 1263.873 kb on + strand, within RS_RS05985 at 1263.873 kb on + strand, within RS_RS05985 at 1263.874 kb on - strand, within RS_RS05985 at 1263.874 kb on - strand, within RS_RS05985 at 1263.960 kb on - strand, within RS_RS05985 at 1264.124 kb on + strand, within RS_RS05985 at 1264.149 kb on - strand, within RS_RS05985 at 1264.149 kb on - strand, within RS_RS05985 at 1264.608 kb on - strand at 1266.021 kb on + strand, within RS_RS05995 at 1266.022 kb on - strand, within RS_RS05995 at 1266.022 kb on - strand, within RS_RS05995 at 1266.148 kb on - strand, within RS_RS05995 at 1266.250 kb on - strand, within RS_RS05995 at 1266.250 kb on - strand, within RS_RS05995 at 1266.342 kb on + strand, within RS_RS05995 at 1266.342 kb on + strand, within RS_RS05995 at 1266.412 kb on - strand, within RS_RS05995 at 1266.433 kb on - strand, within RS_RS05995 at 1266.652 kb on - strand, within RS_RS05995
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 1,263,761 + RS_RS05985 0.40 -0.5 1,263,762 - RS_RS05985 0.40 +0.6 1,263,771 - RS_RS05985 0.41 -0.1 1,263,873 + RS_RS05985 0.47 +3.1 1,263,873 + RS_RS05985 0.47 +1.2 1,263,874 - RS_RS05985 0.47 -3.0 1,263,874 - RS_RS05985 0.47 -1.1 1,263,960 - RS_RS05985 0.53 +0.8 1,264,124 + RS_RS05985 0.64 +0.5 1,264,149 - RS_RS05985 0.66 +0.6 1,264,149 - RS_RS05985 0.66 +1.3 1,264,608 - -1.0 1,266,021 + RS_RS05995 0.27 +0.2 1,266,022 - RS_RS05995 0.27 +1.5 1,266,022 - RS_RS05995 0.27 +2.0 1,266,148 - RS_RS05995 0.37 +0.1 1,266,250 - RS_RS05995 0.46 +0.3 1,266,250 - RS_RS05995 0.46 -1.3 1,266,342 + RS_RS05995 0.53 -0.1 1,266,342 + RS_RS05995 0.53 +0.0 1,266,412 - RS_RS05995 0.59 +0.9 1,266,433 - RS_RS05995 0.61 -0.7 1,266,652 - RS_RS05995 0.79 +0.1
Or see this region's nucleotide sequence