Experiment: Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS04720 and RS_RS04725 are separated by 485 nucleotides RS_RS04725 and RS_RS04730 are separated by 79 nucleotides
RS_RS04720: RS_RS04720 - membrane protein, at 996,877 to 997,569
_RS04720
RS_RS04725: RS_RS04725 - L-histidine N(alpha)-methyltransferase, at 998,055 to 999,101
_RS04725
RS_RS04730: RS_RS04730 - ergothioneine biosynthesis protein EgtB, at 999,181 to 1,000,479
_RS04730
Position (kb) 998
999
1000 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 997.764 kb on + strand at 997.764 kb on + strand at 997.764 kb on + strand at 997.764 kb on + strand at 997.790 kb on - strand at 997.792 kb on - strand at 997.792 kb on - strand at 997.882 kb on - strand at 997.953 kb on - strand at 997.957 kb on + strand at 997.957 kb on + strand at 997.957 kb on + strand at 998.011 kb on - strand at 998.011 kb on - strand at 998.086 kb on - strand at 998.161 kb on - strand, within RS_RS04725 at 998.288 kb on + strand, within RS_RS04725 at 998.304 kb on + strand, within RS_RS04725 at 998.305 kb on - strand, within RS_RS04725 at 998.454 kb on + strand, within RS_RS04725 at 998.454 kb on + strand, within RS_RS04725 at 998.454 kb on + strand, within RS_RS04725 at 998.454 kb on + strand, within RS_RS04725 at 998.454 kb on + strand, within RS_RS04725 at 998.455 kb on - strand, within RS_RS04725 at 998.455 kb on - strand, within RS_RS04725 at 998.610 kb on + strand, within RS_RS04725 at 998.611 kb on - strand, within RS_RS04725 at 998.630 kb on + strand, within RS_RS04725 at 998.631 kb on - strand, within RS_RS04725 at 998.751 kb on + strand, within RS_RS04725 at 999.331 kb on - strand, within RS_RS04730 at 999.614 kb on - strand, within RS_RS04730 at 999.904 kb on + strand, within RS_RS04730 at 999.904 kb on + strand, within RS_RS04730 at 999.904 kb on + strand, within RS_RS04730 at 999.905 kb on - strand, within RS_RS04730 at 999.905 kb on - strand, within RS_RS04730 at 999.952 kb on + strand, within RS_RS04730
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 997,764 + -3.4 997,764 + -2.8 997,764 + -2.4 997,764 + -3.0 997,790 - +0.0 997,792 - +0.7 997,792 - +0.0 997,882 - +1.0 997,953 - +0.2 997,957 + -0.0 997,957 + +2.7 997,957 + +0.0 998,011 - +0.8 998,011 - +0.0 998,086 - +0.1 998,161 - RS_RS04725 0.10 +0.4 998,288 + RS_RS04725 0.22 -0.1 998,304 + RS_RS04725 0.24 +0.4 998,305 - RS_RS04725 0.24 -0.6 998,454 + RS_RS04725 0.38 -1.6 998,454 + RS_RS04725 0.38 +0.2 998,454 + RS_RS04725 0.38 -0.8 998,454 + RS_RS04725 0.38 -0.7 998,454 + RS_RS04725 0.38 +0.1 998,455 - RS_RS04725 0.38 -0.6 998,455 - RS_RS04725 0.38 -0.1 998,610 + RS_RS04725 0.53 -0.3 998,611 - RS_RS04725 0.53 +0.1 998,630 + RS_RS04725 0.55 -0.1 998,631 - RS_RS04725 0.55 -1.0 998,751 + RS_RS04725 0.66 +0.6 999,331 - RS_RS04730 0.12 -0.6 999,614 - RS_RS04730 0.33 +1.6 999,904 + RS_RS04730 0.56 -0.9 999,904 + RS_RS04730 0.56 +0.5 999,904 + RS_RS04730 0.56 +0.6 999,905 - RS_RS04730 0.56 -1.8 999,905 - RS_RS04730 0.56 -0.1 999,952 + RS_RS04730 0.59 -1.0
Or see this region's nucleotide sequence