Experiment: Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02125 and RS_RS02130 are separated by 3 nucleotides RS_RS02130 and RS_RS02135 are separated by 3 nucleotides RS_RS02135 and RS_RS02140 overlap by 4 nucleotides
RS_RS02125: RS_RS02125 - membrane protein, at 456,068 to 458,551
_RS02125
RS_RS02130: RS_RS02130 - outer membrane lipoprotein carrier protein LolA, at 458,555 to 459,190
_RS02130
RS_RS02135: RS_RS02135 - acyl-CoA synthetase, at 459,194 to 460,165
_RS02135
RS_RS02140: RS_RS02140 - beta-hydroxyacyl-ACP dehydratase, at 460,162 to 461,853
_RS02140
Position (kb) 458
459
460 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 457.555 kb on - strand, within RS_RS02125 at 457.563 kb on + strand, within RS_RS02125 at 457.564 kb on - strand, within RS_RS02125 at 458.743 kb on - strand, within RS_RS02130 at 458.838 kb on + strand, within RS_RS02130 at 458.839 kb on - strand, within RS_RS02130 at 458.988 kb on + strand, within RS_RS02130 at 458.989 kb on - strand, within RS_RS02130 at 459.285 kb on + strand at 459.285 kb on + strand at 459.285 kb on + strand at 459.445 kb on - strand, within RS_RS02135 at 459.726 kb on + strand, within RS_RS02135 at 459.727 kb on - strand, within RS_RS02135 at 459.904 kb on - strand, within RS_RS02135 at 459.948 kb on + strand, within RS_RS02135 at 460.039 kb on - strand, within RS_RS02135
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 457,555 - RS_RS02125 0.60 -1.9 457,563 + RS_RS02125 0.60 -0.4 457,564 - RS_RS02125 0.60 -0.8 458,743 - RS_RS02130 0.30 -0.1 458,838 + RS_RS02130 0.44 +0.1 458,839 - RS_RS02130 0.45 -0.5 458,988 + RS_RS02130 0.68 -2.2 458,989 - RS_RS02130 0.68 -0.4 459,285 + -0.8 459,285 + -0.7 459,285 + -0.5 459,445 - RS_RS02135 0.26 -1.1 459,726 + RS_RS02135 0.55 +0.2 459,727 - RS_RS02135 0.55 -0.5 459,904 - RS_RS02135 0.73 +5.6 459,948 + RS_RS02135 0.78 -0.3 460,039 - RS_RS02135 0.87 -1.0
Or see this region's nucleotide sequence