Experiment: Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS01635 and RS_RS01640 are separated by 78 nucleotides RS_RS01640 and RS_RS01645 are separated by 103 nucleotides RS_RS01645 and RS_RS01650 are separated by 99 nucleotides
RS_RS01635: RS_RS01635 - sigma-54-dependent Fis family transcriptional regulator, at 364,559 to 365,875
_RS01635
RS_RS01640: RS_RS01640 - membrane protein, at 365,954 to 366,505
_RS01640
RS_RS01645: RS_RS01645 - O-acetyl-ADP-ribose deacetylase, at 366,609 to 367,124
_RS01645
RS_RS01650: RS_RS01650 - hypothetical protein, at 367,224 to 367,784
_RS01650
Position (kb) 365
366
367 Strain fitness (log2 ratio) -2
-1
0
1
2 at 365.465 kb on + strand, within RS_RS01635 at 365.465 kb on + strand, within RS_RS01635 at 365.465 kb on + strand, within RS_RS01635 at 365.571 kb on - strand, within RS_RS01635 at 365.754 kb on - strand at 366.548 kb on + strand at 366.549 kb on - strand at 366.637 kb on + strand at 366.898 kb on + strand, within RS_RS01645 at 366.898 kb on + strand, within RS_RS01645 at 367.154 kb on - strand at 367.174 kb on + strand at 367.175 kb on - strand at 367.175 kb on - strand at 367.332 kb on + strand, within RS_RS01650
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 365,465 + RS_RS01635 0.69 +0.2 365,465 + RS_RS01635 0.69 -2.3 365,465 + RS_RS01635 0.69 -1.6 365,571 - RS_RS01635 0.77 +1.8 365,754 - -1.8 366,548 + -0.2 366,549 - +1.8 366,637 + +1.5 366,898 + RS_RS01645 0.56 -1.1 366,898 + RS_RS01645 0.56 -0.6 367,154 - -1.3 367,174 + -1.5 367,175 - -0.7 367,175 - +0.0 367,332 + RS_RS01650 0.19 -2.0
Or see this region's nucleotide sequence