Experiment: Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS00625 and RS_RS00630 are separated by 308 nucleotides RS_RS00630 and RS_RS00635 are separated by 141 nucleotides RS_RS00635 and RS_RS00640 are separated by 13 nucleotides
RS_RS00625: RS_RS00625 - YncE family protein, at 148,456 to 149,898
_RS00625
RS_RS00630: RS_RS00630 - Lrp/AsnC family transcriptional regulator, at 150,207 to 150,665
_RS00630
RS_RS00635: RS_RS00635 - glutathione S-transferase, at 150,807 to 151,415
_RS00635
RS_RS00640: RS_RS00640 - HPP family protein, at 151,429 to 152,565
_RS00640
Position (kb) 150
151
152 Strain fitness (log2 ratio) -2
-1
0
1
2 at 149.993 kb on + strand at 149.993 kb on + strand at 149.993 kb on + strand at 149.994 kb on - strand at 149.994 kb on - strand at 149.994 kb on - strand at 149.994 kb on - strand at 150.019 kb on + strand at 150.057 kb on + strand at 150.058 kb on - strand at 150.424 kb on + strand, within RS_RS00630 at 150.424 kb on + strand, within RS_RS00630 at 150.424 kb on + strand, within RS_RS00630 at 150.424 kb on + strand, within RS_RS00630 at 150.425 kb on - strand, within RS_RS00630 at 150.654 kb on - strand at 150.721 kb on + strand at 150.721 kb on + strand at 150.721 kb on + strand at 150.721 kb on + strand at 150.721 kb on + strand at 150.722 kb on - strand at 150.722 kb on - strand at 150.722 kb on - strand at 150.722 kb on - strand at 150.753 kb on + strand at 150.754 kb on - strand at 150.754 kb on - strand at 150.758 kb on + strand at 150.758 kb on + strand at 150.759 kb on - strand at 150.837 kb on + strand at 150.837 kb on + strand at 150.837 kb on + strand at 151.129 kb on - strand, within RS_RS00635 at 151.130 kb on - strand, within RS_RS00635 at 151.344 kb on + strand, within RS_RS00635 at 151.463 kb on + strand at 151.463 kb on + strand at 151.883 kb on + strand, within RS_RS00640 at 152.067 kb on - strand, within RS_RS00640 at 152.067 kb on - strand, within RS_RS00640
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 149,993 + -1.1 149,993 + +1.1 149,993 + +0.6 149,994 - -0.1 149,994 - -1.0 149,994 - +0.5 149,994 - -1.2 150,019 + -0.0 150,057 + +0.8 150,058 - -2.1 150,424 + RS_RS00630 0.47 +0.8 150,424 + RS_RS00630 0.47 +0.9 150,424 + RS_RS00630 0.47 -0.4 150,424 + RS_RS00630 0.47 +0.4 150,425 - RS_RS00630 0.47 -2.2 150,654 - -1.0 150,721 + +0.7 150,721 + +1.8 150,721 + +0.4 150,721 + +0.1 150,721 + +0.5 150,722 - +0.1 150,722 - -1.2 150,722 - +0.1 150,722 - +2.3 150,753 + +0.6 150,754 - +0.2 150,754 - -0.6 150,758 + -0.2 150,758 + +0.7 150,759 - +1.2 150,837 + +0.1 150,837 + +0.8 150,837 + -0.6 151,129 - RS_RS00635 0.53 -0.2 151,130 - RS_RS00635 0.53 -0.5 151,344 + RS_RS00635 0.88 +0.2 151,463 + -0.7 151,463 + +0.5 151,883 + RS_RS00640 0.40 -1.1 152,067 - RS_RS00640 0.56 +0.2 152,067 - RS_RS00640 0.56 +0.2
Or see this region's nucleotide sequence