Experiment: Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS00150 and RS_RS00155 are separated by 194 nucleotides RS_RS00155 and RS_RS00160 are separated by 38 nucleotides RS_RS00160 and RS_RS00165 overlap by 1 nucleotides
RS_RS00150: RS_RS00150 - PLP-dependent aminotransferase family protein, at 35,509 to 37,005
_RS00150
RS_RS00155: RS_RS00155 - nucleoid occlusion factor SlmA, at 37,200 to 37,856
_RS00155
RS_RS00160: RS_RS00160 - pyrimidine 5'-nucleotidase, at 37,895 to 38,758
_RS00160
RS_RS00165: RS_RS00165 - acetylglutamate kinase, at 38,758 to 39,690
_RS00165
Position (kb) 37
38 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 36.433 kb on + strand, within RS_RS00150 at 36.434 kb on - strand, within RS_RS00150 at 36.434 kb on - strand, within RS_RS00150 at 36.434 kb on - strand, within RS_RS00150 at 36.508 kb on + strand, within RS_RS00150 at 36.508 kb on + strand, within RS_RS00150 at 36.508 kb on + strand, within RS_RS00150 at 36.508 kb on + strand, within RS_RS00150 at 36.509 kb on - strand, within RS_RS00150 at 36.509 kb on - strand, within RS_RS00150 at 36.509 kb on - strand, within RS_RS00150 at 36.556 kb on + strand, within RS_RS00150 at 36.706 kb on + strand, within RS_RS00150 at 36.707 kb on - strand, within RS_RS00150 at 36.889 kb on + strand at 36.889 kb on + strand at 36.889 kb on + strand at 37.057 kb on - strand at 37.150 kb on + strand at 37.150 kb on + strand at 37.150 kb on + strand at 37.270 kb on + strand, within RS_RS00155 at 37.642 kb on + strand, within RS_RS00155 at 37.642 kb on + strand, within RS_RS00155 at 37.642 kb on + strand, within RS_RS00155 at 37.643 kb on - strand, within RS_RS00155 at 37.643 kb on - strand, within RS_RS00155 at 37.819 kb on - strand at 37.819 kb on - strand at 37.897 kb on - strand at 37.928 kb on + strand at 37.928 kb on + strand at 37.929 kb on - strand at 37.929 kb on - strand at 37.929 kb on - strand at 37.929 kb on - strand at 37.946 kb on + strand at 37.962 kb on + strand at 38.106 kb on + strand, within RS_RS00160 at 38.586 kb on + strand, within RS_RS00160 at 38.587 kb on - strand, within RS_RS00160 at 38.587 kb on - strand, within RS_RS00160
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 36,433 + RS_RS00150 0.62 -0.2 36,434 - RS_RS00150 0.62 -0.3 36,434 - RS_RS00150 0.62 -0.9 36,434 - RS_RS00150 0.62 -0.3 36,508 + RS_RS00150 0.67 +0.6 36,508 + RS_RS00150 0.67 -3.0 36,508 + RS_RS00150 0.67 +0.2 36,508 + RS_RS00150 0.67 -0.8 36,509 - RS_RS00150 0.67 +1.8 36,509 - RS_RS00150 0.67 +0.2 36,509 - RS_RS00150 0.67 +0.6 36,556 + RS_RS00150 0.70 +0.5 36,706 + RS_RS00150 0.80 -1.6 36,707 - RS_RS00150 0.80 +1.8 36,889 + +0.4 36,889 + +0.4 36,889 + +1.8 37,057 - -0.0 37,150 + +0.1 37,150 + +0.1 37,150 + -0.5 37,270 + RS_RS00155 0.11 +0.2 37,642 + RS_RS00155 0.67 +0.3 37,642 + RS_RS00155 0.67 -0.0 37,642 + RS_RS00155 0.67 -0.3 37,643 - RS_RS00155 0.67 +1.8 37,643 - RS_RS00155 0.67 +0.2 37,819 - +1.4 37,819 - +1.4 37,897 - -0.9 37,928 + -0.9 37,928 + -0.6 37,929 - -0.5 37,929 - -1.4 37,929 - -0.1 37,929 - -0.4 37,946 + -1.3 37,962 + +0.6 38,106 + RS_RS00160 0.24 +0.2 38,586 + RS_RS00160 0.80 -0.2 38,587 - RS_RS00160 0.80 +1.2 38,587 - RS_RS00160 0.80 +1.8
Or see this region's nucleotide sequence