Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS20155

Experiment: Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRS_RS20150 and RS_RS20155 are separated by 510 nucleotidesRS_RS20155 and RS_RS20160 are separated by 52 nucleotides RS_RS20150: RS_RS20150 - hypothetical protein, at 772,047 to 772,697 _RS20150 RS_RS20155: RS_RS20155 - lipopolysaccharide heptosyltransferase I, at 773,208 to 774,206 _RS20155 RS_RS20160: RS_RS20160 - acyltransferase, at 774,259 to 775,386 _RS20160 Position (kb) 773 774 775Strain fitness (log2 ratio) -2 -1 0 1 2 3at 772.220 kb on - strand, within RS_RS20150at 772.220 kb on - strand, within RS_RS20150at 772.242 kb on + strand, within RS_RS20150at 772.242 kb on + strand, within RS_RS20150at 772.242 kb on + strand, within RS_RS20150at 772.242 kb on + strand, within RS_RS20150at 772.381 kb on - strand, within RS_RS20150at 772.381 kb on - strand, within RS_RS20150at 772.381 kb on - strand, within RS_RS20150at 772.381 kb on - strand, within RS_RS20150at 772.963 kb on + strandat 772.964 kb on - strandat 773.025 kb on + strandat 773.026 kb on - strandat 773.026 kb on - strandat 773.026 kb on - strandat 773.026 kb on - strandat 773.026 kb on - strandat 773.026 kb on - strandat 773.028 kb on + strandat 773.029 kb on - strandat 773.029 kb on - strandat 773.029 kb on - strandat 773.029 kb on - strandat 773.042 kb on + strandat 773.042 kb on + strandat 773.043 kb on - strandat 773.153 kb on + strandat 773.153 kb on + strandat 773.154 kb on - strandat 773.159 kb on + strandat 773.159 kb on + strandat 773.160 kb on - strandat 773.160 kb on - strandat 773.160 kb on - strandat 773.160 kb on - strandat 773.160 kb on - strandat 773.160 kb on - strandat 773.228 kb on - strandat 773.466 kb on + strand, within RS_RS20155at 773.467 kb on - strand, within RS_RS20155at 773.496 kb on + strand, within RS_RS20155at 773.497 kb on - strand, within RS_RS20155at 773.497 kb on - strand, within RS_RS20155at 773.589 kb on + strand, within RS_RS20155at 773.590 kb on - strand, within RS_RS20155at 773.667 kb on + strand, within RS_RS20155at 773.668 kb on - strand, within RS_RS20155at 773.668 kb on - strand, within RS_RS20155at 773.692 kb on - strand, within RS_RS20155at 773.692 kb on - strand, within RS_RS20155at 774.228 kb on + strandat 774.359 kb on + strandat 774.448 kb on + strand, within RS_RS20160at 774.449 kb on - strand, within RS_RS20160at 774.497 kb on + strand, within RS_RS20160at 774.497 kb on + strand, within RS_RS20160at 774.497 kb on + strand, within RS_RS20160at 774.497 kb on + strand, within RS_RS20160at 774.497 kb on + strand, within RS_RS20160at 774.497 kb on + strand, within RS_RS20160at 774.497 kb on + strand, within RS_RS20160at 774.497 kb on + strand, within RS_RS20160at 774.498 kb on - strand, within RS_RS20160at 774.498 kb on - strand, within RS_RS20160at 774.498 kb on - strand, within RS_RS20160at 774.498 kb on - strand, within RS_RS20160at 774.499 kb on + strand, within RS_RS20160at 774.499 kb on + strand, within RS_RS20160at 774.500 kb on - strand, within RS_RS20160at 774.500 kb on - strand, within RS_RS20160at 774.500 kb on - strand, within RS_RS20160at 774.500 kb on - strand, within RS_RS20160at 774.500 kb on - strand, within RS_RS20160at 774.725 kb on + strand, within RS_RS20160at 774.725 kb on + strand, within RS_RS20160at 774.725 kb on + strand, within RS_RS20160at 774.726 kb on - strand, within RS_RS20160at 774.726 kb on - strand, within RS_RS20160at 774.809 kb on + strand, within RS_RS20160at 774.810 kb on - strand, within RS_RS20160at 774.944 kb on + strand, within RS_RS20160at 774.945 kb on - strand, within RS_RS20160at 774.946 kb on + strand, within RS_RS20160at 774.959 kb on + strand, within RS_RS20160at 774.980 kb on + strand, within RS_RS20160at 774.980 kb on + strand, within RS_RS20160at 775.002 kb on - strand, within RS_RS20160at 775.002 kb on - strand, within RS_RS20160at 775.107 kb on - strand, within RS_RS20160

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
remove
772,220 - RS_RS20150 0.27 -2.1
772,220 - RS_RS20150 0.27 +0.3
772,242 + RS_RS20150 0.30 -0.1
772,242 + RS_RS20150 0.30 -0.4
772,242 + RS_RS20150 0.30 +1.4
772,242 + RS_RS20150 0.30 -1.5
772,381 - RS_RS20150 0.51 +0.9
772,381 - RS_RS20150 0.51 -0.9
772,381 - RS_RS20150 0.51 -0.0
772,381 - RS_RS20150 0.51 +0.5
772,963 + -0.9
772,964 - -1.8
773,025 + +2.8
773,026 - -0.0
773,026 - +1.6
773,026 - +0.7
773,026 - -0.7
773,026 - +0.1
773,026 - +1.4
773,028 + +0.3
773,029 - +0.5
773,029 - -1.2
773,029 - -0.6
773,029 - -1.5
773,042 + -0.1
773,042 + -1.1
773,043 - +1.4
773,153 + -1.2
773,153 + -0.4
773,154 - -0.9
773,159 + +0.5
773,159 + -0.4
773,160 - +1.4
773,160 - +1.6
773,160 - -0.3
773,160 - -0.8
773,160 - -0.4
773,160 - -0.3
773,228 - +1.4
773,466 + RS_RS20155 0.26 -0.8
773,467 - RS_RS20155 0.26 -1.2
773,496 + RS_RS20155 0.29 +0.5
773,497 - RS_RS20155 0.29 +0.3
773,497 - RS_RS20155 0.29 +0.2
773,589 + RS_RS20155 0.38 -0.1
773,590 - RS_RS20155 0.38 -0.1
773,667 + RS_RS20155 0.46 +1.4
773,668 - RS_RS20155 0.46 -0.6
773,668 - RS_RS20155 0.46 -0.6
773,692 - RS_RS20155 0.48 +1.2
773,692 - RS_RS20155 0.48 +0.3
774,228 + -0.4
774,359 + -0.4
774,448 + RS_RS20160 0.17 +0.0
774,449 - RS_RS20160 0.17 +0.1
774,497 + RS_RS20160 0.21 -0.6
774,497 + RS_RS20160 0.21 -1.0
774,497 + RS_RS20160 0.21 +0.4
774,497 + RS_RS20160 0.21 -0.6
774,497 + RS_RS20160 0.21 +0.4
774,497 + RS_RS20160 0.21 -0.6
774,497 + RS_RS20160 0.21 +0.4
774,497 + RS_RS20160 0.21 +0.3
774,498 - RS_RS20160 0.21 -2.1
774,498 - RS_RS20160 0.21 +1.2
774,498 - RS_RS20160 0.21 +0.6
774,498 - RS_RS20160 0.21 +1.4
774,499 + RS_RS20160 0.21 -1.2
774,499 + RS_RS20160 0.21 -0.3
774,500 - RS_RS20160 0.21 +0.4
774,500 - RS_RS20160 0.21 -1.2
774,500 - RS_RS20160 0.21 +1.4
774,500 - RS_RS20160 0.21 -0.6
774,500 - RS_RS20160 0.21 -0.5
774,725 + RS_RS20160 0.41 +0.6
774,725 + RS_RS20160 0.41 -0.4
774,725 + RS_RS20160 0.41 -0.1
774,726 - RS_RS20160 0.41 -0.2
774,726 - RS_RS20160 0.41 +0.0
774,809 + RS_RS20160 0.49 +0.7
774,810 - RS_RS20160 0.49 +0.6
774,944 + RS_RS20160 0.61 +0.2
774,945 - RS_RS20160 0.61 +0.4
774,946 + RS_RS20160 0.61 -1.0
774,959 + RS_RS20160 0.62 -0.2
774,980 + RS_RS20160 0.64 +0.5
774,980 + RS_RS20160 0.64 -0.3
775,002 - RS_RS20160 0.66 -0.5
775,002 - RS_RS20160 0.66 -0.8
775,107 - RS_RS20160 0.75 +0.3

Or see this region's nucleotide sequence