Experiment: Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS19020 and RS_RS19025 are separated by 5 nucleotides RS_RS19025 and RS_RS19030 are separated by 103 nucleotides RS_RS19030 and RS_RS19035 are separated by 235 nucleotides
RS_RS19020: RS_RS19020 - glycosyltransferase family 2 protein, at 490,903 to 491,991
_RS19020
RS_RS19025: RS_RS19025 - mannosyltransferase, at 491,997 to 493,370
_RS19025
RS_RS19030: RS_RS19030 - flagellar hook-basal body complex protein FliE, at 493,474 to 493,806
_RS19030
RS_RS19035: RS_RS19035 - flagellar basal body M-ring protein FliF, at 494,042 to 495,877
_RS19035
Position (kb) 491
492
493
494 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 491.175 kb on - strand, within RS_RS19020 at 491.327 kb on + strand, within RS_RS19020 at 491.327 kb on + strand, within RS_RS19020 at 491.327 kb on + strand, within RS_RS19020 at 491.396 kb on + strand, within RS_RS19020 at 491.397 kb on - strand, within RS_RS19020 at 491.481 kb on - strand, within RS_RS19020 at 492.073 kb on + strand at 492.074 kb on - strand at 492.074 kb on - strand at 492.101 kb on - strand at 492.109 kb on + strand at 492.217 kb on + strand, within RS_RS19025 at 492.354 kb on - strand, within RS_RS19025 at 492.355 kb on + strand, within RS_RS19025 at 492.355 kb on + strand, within RS_RS19025 at 492.355 kb on + strand, within RS_RS19025 at 492.479 kb on + strand, within RS_RS19025 at 492.574 kb on + strand, within RS_RS19025 at 492.574 kb on + strand, within RS_RS19025 at 492.796 kb on + strand, within RS_RS19025 at 492.796 kb on + strand, within RS_RS19025 at 492.796 kb on + strand, within RS_RS19025 at 492.817 kb on + strand, within RS_RS19025 at 492.817 kb on + strand, within RS_RS19025 at 492.818 kb on - strand, within RS_RS19025 at 492.850 kb on + strand, within RS_RS19025 at 492.850 kb on + strand, within RS_RS19025 at 492.851 kb on - strand, within RS_RS19025 at 492.880 kb on + strand, within RS_RS19025 at 492.881 kb on - strand, within RS_RS19025 at 493.151 kb on - strand, within RS_RS19025 at 493.827 kb on + strand at 493.828 kb on - strand at 493.884 kb on + strand at 493.884 kb on + strand at 493.885 kb on - strand at 493.885 kb on - strand at 493.969 kb on + strand at 493.970 kb on - strand at 494.087 kb on - strand at 494.087 kb on - strand at 494.259 kb on - strand, within RS_RS19035 at 494.270 kb on + strand, within RS_RS19035 at 494.270 kb on + strand, within RS_RS19035 at 494.271 kb on - strand, within RS_RS19035 at 494.271 kb on - strand, within RS_RS19035
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 491,175 - RS_RS19020 0.25 +0.2 491,327 + RS_RS19020 0.39 +1.4 491,327 + RS_RS19020 0.39 -0.2 491,327 + RS_RS19020 0.39 -1.9 491,396 + RS_RS19020 0.45 -0.6 491,397 - RS_RS19020 0.45 +0.1 491,481 - RS_RS19020 0.53 +0.0 492,073 + +1.8 492,074 - +0.2 492,074 - -0.1 492,101 - -0.9 492,109 + -0.4 492,217 + RS_RS19025 0.16 -1.3 492,354 - RS_RS19025 0.26 -0.9 492,355 + RS_RS19025 0.26 +0.9 492,355 + RS_RS19025 0.26 +0.5 492,355 + RS_RS19025 0.26 -1.2 492,479 + RS_RS19025 0.35 -1.3 492,574 + RS_RS19025 0.42 +0.5 492,574 + RS_RS19025 0.42 +0.7 492,796 + RS_RS19025 0.58 -2.5 492,796 + RS_RS19025 0.58 +0.4 492,796 + RS_RS19025 0.58 -3.2 492,817 + RS_RS19025 0.60 -2.0 492,817 + RS_RS19025 0.60 +0.3 492,818 - RS_RS19025 0.60 -0.1 492,850 + RS_RS19025 0.62 -1.3 492,850 + RS_RS19025 0.62 -2.2 492,851 - RS_RS19025 0.62 +1.5 492,880 + RS_RS19025 0.64 +2.2 492,881 - RS_RS19025 0.64 +0.6 493,151 - RS_RS19025 0.84 +1.8 493,827 + -1.3 493,828 - -2.9 493,884 + +0.2 493,884 + -1.0 493,885 - -1.1 493,885 - -0.6 493,969 + +2.4 493,970 - +1.4 494,087 - +1.0 494,087 - -1.0 494,259 - RS_RS19035 0.12 -0.3 494,270 + RS_RS19035 0.12 +1.4 494,270 + RS_RS19035 0.12 +2.2 494,271 - RS_RS19035 0.12 -0.2 494,271 - RS_RS19035 0.12 +0.2
Or see this region's nucleotide sequence