Experiment: Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS05270 and RS_RS05275 are separated by 20 nucleotides RS_RS05275 and RS_RS05280 overlap by 4 nucleotides RS_RS05280 and RS_RS05285 overlap by 4 nucleotides RS_RS05285 and RS_RS05290 overlap by 4 nucleotides
RS_RS05270: RS_RS05270 - GTPase Era, at 1,117,312 to 1,118,259
_RS05270
RS_RS05275: RS_RS05275 - DNA repair protein RecO, at 1,118,280 to 1,119,098
_RS05275
RS_RS05280: RS_RS05280 - pyridoxine 5'-phosphate synthase, at 1,119,095 to 1,119,886
_RS05280
RS_RS05285: RS_RS05285 - holo-ACP synthase, at 1,119,883 to 1,120,326
_RS05285
RS_RS05290: RS_RS05290 - beta-N-acetylhexosaminidase, at 1,120,323 to 1,121,375
_RS05290
Position (kb) 1119
1120 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 1118.246 kb on - strand at 1118.428 kb on - strand, within RS_RS05275 at 1118.979 kb on + strand, within RS_RS05275 at 1118.979 kb on + strand, within RS_RS05275 at 1120.507 kb on + strand, within RS_RS05290 at 1120.731 kb on + strand, within RS_RS05290 at 1120.732 kb on - strand, within RS_RS05290
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 1,118,246 - +1.5 1,118,428 - RS_RS05275 0.18 +4.8 1,118,979 + RS_RS05275 0.85 +1.9 1,118,979 + RS_RS05275 0.85 +2.1 1,120,507 + RS_RS05290 0.17 +0.3 1,120,731 + RS_RS05290 0.39 +0.3 1,120,732 - RS_RS05290 0.39 -1.3
Or see this region's nucleotide sequence