Experiment: Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS04665 and RS_RS04670 are separated by 7 nucleotides RS_RS04670 and RS_RS04675 are separated by 24 nucleotides RS_RS04675 and RS_RS04680 overlap by 4 nucleotides
RS_RS04665: RS_RS04665 - cobalamin biosynthesis protein CobD, at 987,352 to 988,293
_RS04665
RS_RS04670: RS_RS04670 - hypothetical protein, at 988,301 to 988,615
_RS04670
RS_RS04675: RS_RS04675 - GTPase RsgA, at 988,640 to 989,596
_RS04675
RS_RS04680: RS_RS04680 - peptidase M48, at 989,593 to 990,849
_RS04680
Position (kb) 988
989
990 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 987.641 kb on - strand, within RS_RS04665 at 987.759 kb on + strand, within RS_RS04665 at 987.868 kb on + strand, within RS_RS04665 at 987.955 kb on + strand, within RS_RS04665 at 987.956 kb on - strand, within RS_RS04665 at 988.018 kb on + strand, within RS_RS04665 at 989.648 kb on + strand at 989.649 kb on - strand at 989.652 kb on - strand at 989.907 kb on - strand, within RS_RS04680 at 990.114 kb on - strand, within RS_RS04680 at 990.318 kb on - strand, within RS_RS04680 at 990.318 kb on - strand, within RS_RS04680 at 990.483 kb on - strand, within RS_RS04680
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 987,641 - RS_RS04665 0.31 +1.6 987,759 + RS_RS04665 0.43 +0.6 987,868 + RS_RS04665 0.55 -0.0 987,955 + RS_RS04665 0.64 +1.2 987,956 - RS_RS04665 0.64 +1.2 988,018 + RS_RS04665 0.71 +0.6 989,648 + -0.0 989,649 - -0.3 989,652 - -2.5 989,907 - RS_RS04680 0.25 -3.9 990,114 - RS_RS04680 0.41 -0.1 990,318 - RS_RS04680 0.58 +0.7 990,318 - RS_RS04680 0.58 +0.6 990,483 - RS_RS04680 0.71 -2.4
Or see this region's nucleotide sequence