Experiment: Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS04395 and RS_RS04400 overlap by 4 nucleotides RS_RS04400 and RS_RS04405 are separated by 67 nucleotides RS_RS04405 and RS_RS04410 are separated by 62 nucleotides RS_RS04410 and RS_RS04415 are separated by 423 nucleotides
RS_RS04390: RS_RS04390 - membrane protein, at 917,511 to 917,801
_RS04390
RS_RS04395: RS_RS04395 - hypothetical protein, at 917,798 to 918,274
_RS04395
RS_RS04400: RS_RS04400 - lysozyme, at 918,271 to 918,732
_RS04400
RS_RS04405: RS_RS04405 - hypothetical protein, at 918,800 to 919,099
_RS04405
RS_RS04410: RS_RS04410 - DUF1484 domain-containing protein, at 919,162 to 919,500
_RS04410
RS_RS04415: RS_RS04415 - hypothetical protein, at 919,924 to 920,871
_RS04415
Position (kb) 918
919
920 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 918.113 kb on + strand, within RS_RS04395 at 918.173 kb on - strand, within RS_RS04395 at 918.252 kb on + strand at 918.349 kb on - strand, within RS_RS04400 at 918.349 kb on - strand, within RS_RS04400 at 918.364 kb on + strand, within RS_RS04400 at 918.364 kb on + strand, within RS_RS04400 at 918.364 kb on + strand, within RS_RS04400 at 918.365 kb on - strand, within RS_RS04400 at 918.365 kb on - strand, within RS_RS04400 at 918.454 kb on + strand, within RS_RS04400 at 918.455 kb on - strand, within RS_RS04400 at 918.455 kb on - strand, within RS_RS04400 at 918.455 kb on - strand, within RS_RS04400 at 918.500 kb on - strand, within RS_RS04400 at 918.658 kb on + strand, within RS_RS04400 at 918.717 kb on - strand at 918.794 kb on + strand at 918.867 kb on + strand, within RS_RS04405 at 918.899 kb on + strand, within RS_RS04405 at 918.899 kb on + strand, within RS_RS04405 at 919.097 kb on + strand at 919.097 kb on + strand at 919.098 kb on - strand at 919.102 kb on - strand at 919.163 kb on + strand at 919.343 kb on + strand, within RS_RS04410 at 919.408 kb on - strand, within RS_RS04410 at 919.494 kb on + strand at 919.494 kb on + strand at 919.495 kb on - strand at 919.505 kb on + strand at 919.505 kb on + strand at 919.615 kb on + strand at 919.616 kb on - strand at 919.688 kb on + strand at 919.689 kb on - strand at 919.736 kb on + strand at 919.736 kb on + strand at 919.737 kb on - strand at 919.737 kb on - strand at 919.741 kb on + strand at 919.741 kb on + strand at 919.742 kb on - strand at 919.742 kb on - strand at 919.742 kb on - strand at 919.831 kb on + strand at 919.877 kb on - strand at 920.009 kb on + strand at 920.009 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 918,113 + RS_RS04395 0.66 -2.2 918,173 - RS_RS04395 0.79 +0.2 918,252 + +1.3 918,349 - RS_RS04400 0.17 +0.9 918,349 - RS_RS04400 0.17 +0.6 918,364 + RS_RS04400 0.20 +0.3 918,364 + RS_RS04400 0.20 -0.4 918,364 + RS_RS04400 0.20 +0.3 918,365 - RS_RS04400 0.20 -1.7 918,365 - RS_RS04400 0.20 -1.4 918,454 + RS_RS04400 0.40 +1.6 918,455 - RS_RS04400 0.40 -2.3 918,455 - RS_RS04400 0.40 +0.0 918,455 - RS_RS04400 0.40 +0.6 918,500 - RS_RS04400 0.50 +0.0 918,658 + RS_RS04400 0.84 +0.1 918,717 - -0.4 918,794 + -1.1 918,867 + RS_RS04405 0.22 +0.7 918,899 + RS_RS04405 0.33 -0.1 918,899 + RS_RS04405 0.33 +1.1 919,097 + -0.1 919,097 + +0.9 919,098 - +1.1 919,102 - -1.8 919,163 + -0.1 919,343 + RS_RS04410 0.53 -0.5 919,408 - RS_RS04410 0.73 +0.2 919,494 + +0.7 919,494 + +1.1 919,495 - +0.1 919,505 + +0.1 919,505 + -0.1 919,615 + -0.0 919,616 - +0.9 919,688 + +3.6 919,689 - +2.1 919,736 + -0.9 919,736 + +0.2 919,737 - -0.3 919,737 - +0.6 919,741 + -1.9 919,741 + -0.9 919,742 - +1.7 919,742 - -0.7 919,742 - -0.5 919,831 + -0.5 919,877 - -0.8 920,009 + -1.1 920,009 + +1.3
Or see this region's nucleotide sequence