Experiment: Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS04040 and RS_RS04045 are separated by 108 nucleotides RS_RS04045 and RS_RS04050 are separated by 82 nucleotides RS_RS04050 and RS_RS04055 are separated by 12 nucleotides
RS_RS04040: RS_RS04040 - LysR family transcriptional regulator, at 851,739 to 852,647
_RS04040
RS_RS04045: RS_RS04045 - MFS transporter, at 852,756 to 853,976
_RS04045
RS_RS04050: RS_RS04050 - class II aldolase, at 854,059 to 854,844
_RS04050
RS_RS04055: RS_RS04055 - tautomerase, at 854,857 to 855,045
_RS04055
Position (kb) 852
853
854 Strain fitness (log2 ratio) -1
0
1 at 851.912 kb on - strand, within RS_RS04040 at 851.912 kb on - strand, within RS_RS04040 at 852.055 kb on + strand, within RS_RS04040 at 852.448 kb on + strand, within RS_RS04040 at 852.449 kb on - strand, within RS_RS04040 at 852.682 kb on + strand at 852.713 kb on + strand at 852.713 kb on + strand at 852.713 kb on + strand at 852.713 kb on + strand at 852.714 kb on - strand at 852.714 kb on - strand at 852.739 kb on - strand at 852.739 kb on - strand at 852.963 kb on + strand, within RS_RS04045 at 852.964 kb on - strand, within RS_RS04045 at 852.964 kb on - strand, within RS_RS04045 at 852.964 kb on - strand, within RS_RS04045 at 853.470 kb on + strand, within RS_RS04045 at 853.642 kb on - strand, within RS_RS04045 at 853.821 kb on + strand, within RS_RS04045 at 854.024 kb on - strand at 854.188 kb on + strand, within RS_RS04050 at 854.188 kb on + strand, within RS_RS04050 at 854.188 kb on + strand, within RS_RS04050 at 854.188 kb on + strand, within RS_RS04050 at 854.188 kb on + strand, within RS_RS04050 at 854.188 kb on + strand, within RS_RS04050 at 854.189 kb on - strand, within RS_RS04050 at 854.427 kb on + strand, within RS_RS04050 at 854.818 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 851,912 - RS_RS04040 0.19 +1.6 851,912 - RS_RS04040 0.19 +0.2 852,055 + RS_RS04040 0.35 -1.6 852,448 + RS_RS04040 0.78 -1.3 852,449 - RS_RS04040 0.78 +0.5 852,682 + +0.0 852,713 + +0.4 852,713 + -0.4 852,713 + -0.3 852,713 + +1.6 852,714 - +1.1 852,714 - +0.6 852,739 - +0.6 852,739 - -0.8 852,963 + RS_RS04045 0.17 -0.6 852,964 - RS_RS04045 0.17 -0.1 852,964 - RS_RS04045 0.17 +0.3 852,964 - RS_RS04045 0.17 +1.2 853,470 + RS_RS04045 0.58 +0.5 853,642 - RS_RS04045 0.73 -0.7 853,821 + RS_RS04045 0.87 +1.1 854,024 - -1.7 854,188 + RS_RS04050 0.16 +0.3 854,188 + RS_RS04050 0.16 +0.1 854,188 + RS_RS04050 0.16 -0.1 854,188 + RS_RS04050 0.16 +0.8 854,188 + RS_RS04050 0.16 -1.4 854,188 + RS_RS04050 0.16 +0.4 854,189 - RS_RS04050 0.17 -0.1 854,427 + RS_RS04050 0.47 +0.5 854,818 - +1.0
Or see this region's nucleotide sequence