Experiment: Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS03975 and RS_RS03980 are separated by 67 nucleotides RS_RS03980 and RS_RS03985 are separated by 62 nucleotides RS_RS03985 and RS_RS03990 are separated by 10 nucleotides RS_RS03990 and RS_RS03995 are separated by 212 nucleotides
RS_RS03975: RS_RS03975 - glutamine--tRNA ligase, at 834,984 to 836,726
_RS03975
RS_RS03980: RS_RS03980 - hypothetical protein, at 836,794 to 837,147
_RS03980
RS_RS03985: RS_RS03985 - tripartite tricarboxylate transporter permease, at 837,210 to 838,712
_RS03985
RS_RS03990: RS_RS03990 - tripartite tricarboxylate transporter TctB family protein, at 838,723 to 839,208
_RS03990
RS_RS03995: RS_RS03995 - DUF2214 domain-containing protein, at 839,421 to 839,873
_RS03995
Position (kb) 837
838
839 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 837.211 kb on + strand at 837.502 kb on + strand, within RS_RS03985 at 837.502 kb on + strand, within RS_RS03985 at 837.502 kb on + strand, within RS_RS03985 at 837.551 kb on - strand, within RS_RS03985 at 837.877 kb on + strand, within RS_RS03985 at 838.507 kb on + strand, within RS_RS03985 at 838.510 kb on + strand, within RS_RS03985 at 838.510 kb on + strand, within RS_RS03985 at 838.510 kb on + strand, within RS_RS03985 at 838.510 kb on + strand, within RS_RS03985 at 838.511 kb on - strand, within RS_RS03985 at 838.511 kb on - strand, within RS_RS03985 at 838.511 kb on - strand, within RS_RS03985 at 838.553 kb on + strand, within RS_RS03985 at 838.554 kb on - strand, within RS_RS03985 at 838.554 kb on - strand, within RS_RS03985 at 838.554 kb on - strand, within RS_RS03985 at 838.554 kb on - strand, within RS_RS03985 at 838.556 kb on - strand, within RS_RS03985 at 838.649 kb on - strand at 839.064 kb on - strand, within RS_RS03990 at 839.656 kb on + strand, within RS_RS03995 at 839.656 kb on + strand, within RS_RS03995 at 839.681 kb on - strand, within RS_RS03995
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 837,211 + +1.8 837,502 + RS_RS03985 0.19 +1.7 837,502 + RS_RS03985 0.19 +1.5 837,502 + RS_RS03985 0.19 -0.2 837,551 - RS_RS03985 0.23 -0.0 837,877 + RS_RS03985 0.44 -0.1 838,507 + RS_RS03985 0.86 -0.1 838,510 + RS_RS03985 0.86 +1.6 838,510 + RS_RS03985 0.86 +3.2 838,510 + RS_RS03985 0.86 +0.3 838,510 + RS_RS03985 0.86 -2.7 838,511 - RS_RS03985 0.87 -0.4 838,511 - RS_RS03985 0.87 +1.0 838,511 - RS_RS03985 0.87 -0.6 838,553 + RS_RS03985 0.89 -0.2 838,554 - RS_RS03985 0.89 +1.1 838,554 - RS_RS03985 0.89 +2.6 838,554 - RS_RS03985 0.89 +0.9 838,554 - RS_RS03985 0.89 -0.4 838,556 - RS_RS03985 0.90 +1.9 838,649 - +1.5 839,064 - RS_RS03990 0.70 -0.4 839,656 + RS_RS03995 0.52 -1.4 839,656 + RS_RS03995 0.52 -0.6 839,681 - RS_RS03995 0.57 -0.6
Or see this region's nucleotide sequence