Experiment: Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02765 and RS_RS02770 are separated by 274 nucleotides RS_RS02770 and RS_RS02775 are separated by 66 nucleotides RS_RS02775 and RS_RS02780 are separated by 84 nucleotides
RS_RS02765: RS_RS02765 - regulatory protein RecX, at 597,330 to 597,809
_RS02765
RS_RS02770: RS_RS02770 - DUF2889 domain-containing protein, at 598,084 to 598,710
_RS02770
RS_RS02775: RS_RS02775 - succinyl-CoA ligase subunit beta, at 598,777 to 599,943
_RS02775
RS_RS02780: RS_RS02780 - succinate--CoA ligase subunit alpha, at 600,028 to 600,909
_RS02780
Position (kb) 598
599
600 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 597.948 kb on + strand at 597.948 kb on + strand at 598.148 kb on - strand, within RS_RS02770 at 598.232 kb on + strand, within RS_RS02770 at 598.232 kb on + strand, within RS_RS02770 at 598.232 kb on + strand, within RS_RS02770 at 598.783 kb on - strand at 598.783 kb on - strand at 598.820 kb on - strand at 599.102 kb on - strand, within RS_RS02775 at 599.102 kb on - strand, within RS_RS02775 at 599.329 kb on + strand, within RS_RS02775 at 599.330 kb on - strand, within RS_RS02775 at 599.330 kb on - strand, within RS_RS02775 at 599.398 kb on - strand, within RS_RS02775 at 599.531 kb on - strand, within RS_RS02775 at 599.942 kb on - strand at 599.965 kb on - strand at 600.250 kb on + strand, within RS_RS02780 at 600.250 kb on + strand, within RS_RS02780 at 600.517 kb on + strand, within RS_RS02780 at 600.907 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 597,948 + -1.2 597,948 + -0.2 598,148 - RS_RS02770 0.10 +1.7 598,232 + RS_RS02770 0.24 +1.0 598,232 + RS_RS02770 0.24 +1.7 598,232 + RS_RS02770 0.24 -0.2 598,783 - +0.1 598,783 - -0.1 598,820 - -2.8 599,102 - RS_RS02775 0.28 +0.5 599,102 - RS_RS02775 0.28 -2.2 599,329 + RS_RS02775 0.47 -2.0 599,330 - RS_RS02775 0.47 -2.6 599,330 - RS_RS02775 0.47 +1.7 599,398 - RS_RS02775 0.53 -2.7 599,531 - RS_RS02775 0.65 +0.3 599,942 - -2.5 599,965 - +0.7 600,250 + RS_RS02780 0.25 -0.7 600,250 + RS_RS02780 0.25 +0.1 600,517 + RS_RS02780 0.55 -2.2 600,907 + -0.0
Or see this region's nucleotide sequence