Experiment: Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS01370 and RS_RS01375 are separated by 168 nucleotides RS_RS01375 and RS_RS01380 are separated by 160 nucleotides RS_RS01380 and RS_RS01385 are separated by 19 nucleotides RS_RS01385 and RS_RS01390 are separated by 79 nucleotides
RS_RS01370: RS_RS01370 - isovaleryl-CoA dehydrogenase, at 312,256 to 313,437
_RS01370
RS_RS01375: RS_RS01375 - MerR family DNA-binding transcriptional regulator, at 313,606 to 314,103
_RS01375
RS_RS01380: RS_RS01380 - Zn-dependent hydrolase, at 314,264 to 315,343
_RS01380
RS_RS01385: RS_RS01385 - antibiotic biosynthesis monooxygenase, at 315,363 to 315,746
_RS01385
RS_RS01390: RS_RS01390 - hypothetical protein, at 315,826 to 316,671
_RS01390
Position (kb) 314
315
316 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 313.808 kb on + strand, within RS_RS01375 at 313.901 kb on + strand, within RS_RS01375 at 313.901 kb on + strand, within RS_RS01375 at 313.902 kb on - strand, within RS_RS01375 at 313.962 kb on - strand, within RS_RS01375 at 313.962 kb on - strand, within RS_RS01375 at 314.103 kb on + strand at 314.103 kb on + strand at 314.104 kb on - strand at 314.104 kb on - strand at 314.104 kb on - strand at 314.104 kb on - strand at 314.104 kb on - strand at 314.104 kb on - strand at 314.104 kb on - strand at 314.164 kb on + strand at 314.196 kb on + strand at 314.196 kb on + strand at 314.245 kb on + strand at 314.352 kb on - strand at 314.352 kb on - strand at 314.772 kb on - strand, within RS_RS01380 at 314.772 kb on - strand, within RS_RS01380 at 314.772 kb on - strand, within RS_RS01380 at 314.774 kb on + strand, within RS_RS01380 at 314.774 kb on + strand, within RS_RS01380 at 314.774 kb on + strand, within RS_RS01380 at 314.775 kb on - strand, within RS_RS01380 at 314.775 kb on - strand, within RS_RS01380 at 314.904 kb on - strand, within RS_RS01380 at 315.011 kb on + strand, within RS_RS01380 at 315.032 kb on + strand, within RS_RS01380 at 315.032 kb on + strand, within RS_RS01380 at 315.033 kb on - strand, within RS_RS01380 at 315.033 kb on - strand, within RS_RS01380 at 315.436 kb on - strand, within RS_RS01385 at 315.438 kb on + strand, within RS_RS01385 at 315.438 kb on + strand, within RS_RS01385 at 315.439 kb on - strand, within RS_RS01385 at 315.687 kb on + strand, within RS_RS01385 at 315.688 kb on - strand, within RS_RS01385 at 315.688 kb on - strand, within RS_RS01385 at 315.723 kb on + strand at 315.723 kb on + strand at 315.857 kb on + strand at 315.917 kb on + strand, within RS_RS01390 at 315.918 kb on - strand, within RS_RS01390 at 315.974 kb on + strand, within RS_RS01390 at 316.161 kb on + strand, within RS_RS01390 at 316.162 kb on - strand, within RS_RS01390 at 316.163 kb on + strand, within RS_RS01390 at 316.163 kb on + strand, within RS_RS01390 at 316.163 kb on + strand, within RS_RS01390 at 316.164 kb on - strand, within RS_RS01390 at 316.164 kb on - strand, within RS_RS01390 at 316.164 kb on - strand, within RS_RS01390 at 316.164 kb on - strand, within RS_RS01390 at 316.164 kb on - strand, within RS_RS01390 at 316.164 kb on - strand, within RS_RS01390 at 316.209 kb on - strand, within RS_RS01390 at 316.325 kb on + strand, within RS_RS01390 at 316.325 kb on + strand, within RS_RS01390 at 316.325 kb on + strand, within RS_RS01390 at 316.327 kb on + strand, within RS_RS01390 at 316.327 kb on + strand, within RS_RS01390 at 316.327 kb on + strand, within RS_RS01390 at 316.328 kb on - strand, within RS_RS01390 at 316.328 kb on - strand, within RS_RS01390 at 316.328 kb on - strand, within RS_RS01390
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 313,808 + RS_RS01375 0.41 +1.8 313,901 + RS_RS01375 0.59 -0.3 313,901 + RS_RS01375 0.59 +1.0 313,902 - RS_RS01375 0.59 +2.0 313,962 - RS_RS01375 0.71 +0.7 313,962 - RS_RS01375 0.71 +1.8 314,103 + -0.4 314,103 + -0.9 314,104 - +0.4 314,104 - -0.1 314,104 - +0.5 314,104 - +0.2 314,104 - +1.8 314,104 - -0.6 314,104 - -1.0 314,164 + +3.2 314,196 + +0.8 314,196 + -1.6 314,245 + +0.2 314,352 - -2.1 314,352 - +1.5 314,772 - RS_RS01380 0.47 +0.1 314,772 - RS_RS01380 0.47 -0.1 314,772 - RS_RS01380 0.47 +1.8 314,774 + RS_RS01380 0.47 -0.6 314,774 + RS_RS01380 0.47 -3.2 314,774 + RS_RS01380 0.47 -0.2 314,775 - RS_RS01380 0.47 +0.1 314,775 - RS_RS01380 0.47 +0.3 314,904 - RS_RS01380 0.59 +0.3 315,011 + RS_RS01380 0.69 +0.2 315,032 + RS_RS01380 0.71 +0.9 315,032 + RS_RS01380 0.71 +0.7 315,033 - RS_RS01380 0.71 -0.6 315,033 - RS_RS01380 0.71 +1.8 315,436 - RS_RS01385 0.19 -0.1 315,438 + RS_RS01385 0.20 +1.4 315,438 + RS_RS01385 0.20 -0.7 315,439 - RS_RS01385 0.20 +0.3 315,687 + RS_RS01385 0.84 +1.1 315,688 - RS_RS01385 0.85 +0.5 315,688 - RS_RS01385 0.85 -0.5 315,723 + +1.7 315,723 + -0.4 315,857 + +0.9 315,917 + RS_RS01390 0.11 +0.9 315,918 - RS_RS01390 0.11 -0.6 315,974 + RS_RS01390 0.17 +0.9 316,161 + RS_RS01390 0.40 -1.1 316,162 - RS_RS01390 0.40 +0.0 316,163 + RS_RS01390 0.40 -0.2 316,163 + RS_RS01390 0.40 +0.5 316,163 + RS_RS01390 0.40 -0.3 316,164 - RS_RS01390 0.40 -0.6 316,164 - RS_RS01390 0.40 -0.0 316,164 - RS_RS01390 0.40 -1.6 316,164 - RS_RS01390 0.40 -0.5 316,164 - RS_RS01390 0.40 -0.0 316,164 - RS_RS01390 0.40 +0.2 316,209 - RS_RS01390 0.45 +0.4 316,325 + RS_RS01390 0.59 +0.8 316,325 + RS_RS01390 0.59 +0.7 316,325 + RS_RS01390 0.59 -1.4 316,327 + RS_RS01390 0.59 -0.6 316,327 + RS_RS01390 0.59 -2.4 316,327 + RS_RS01390 0.59 +0.1 316,328 - RS_RS01390 0.59 -0.9 316,328 - RS_RS01390 0.59 +0.2 316,328 - RS_RS01390 0.59 +0.8
Or see this region's nucleotide sequence