Experiment: Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS01130 and RS_RS01135 are separated by 7 nucleotides RS_RS01135 and RS_RS01140 are separated by 422 nucleotides
RS_RS01130: RS_RS01130 - membrane protein, at 252,098 to 253,294
_RS01130
RS_RS01135: RS_RS01135 - LysE family translocator, at 253,302 to 253,937
_RS01135
RS_RS01140: RS_RS01140 - hypothetical protein, at 254,360 to 255,166
_RS01140
Position (kb) 253
254 Strain fitness (log2 ratio) -1
0
1
2 at 252.450 kb on + strand, within RS_RS01130 at 252.450 kb on + strand, within RS_RS01130 at 252.450 kb on + strand, within RS_RS01130 at 252.450 kb on + strand, within RS_RS01130 at 252.450 kb on + strand, within RS_RS01130 at 252.450 kb on + strand, within RS_RS01130 at 252.450 kb on + strand, within RS_RS01130 at 252.450 kb on + strand, within RS_RS01130 at 252.451 kb on - strand, within RS_RS01130 at 252.451 kb on - strand, within RS_RS01130 at 252.451 kb on - strand, within RS_RS01130 at 252.451 kb on - strand, within RS_RS01130 at 252.451 kb on - strand, within RS_RS01130 at 252.451 kb on - strand, within RS_RS01130 at 252.456 kb on + strand, within RS_RS01130 at 252.457 kb on - strand, within RS_RS01130 at 252.457 kb on - strand, within RS_RS01130 at 252.534 kb on + strand, within RS_RS01130 at 252.534 kb on + strand, within RS_RS01130 at 252.535 kb on - strand, within RS_RS01130 at 252.535 kb on - strand, within RS_RS01130 at 252.535 kb on - strand, within RS_RS01130 at 252.741 kb on + strand, within RS_RS01130 at 252.742 kb on - strand, within RS_RS01130 at 252.954 kb on + strand, within RS_RS01130 at 252.954 kb on + strand, within RS_RS01130 at 252.955 kb on - strand, within RS_RS01130 at 252.955 kb on - strand, within RS_RS01130 at 252.955 kb on - strand, within RS_RS01130 at 253.430 kb on - strand, within RS_RS01135 at 253.685 kb on - strand, within RS_RS01135 at 253.685 kb on - strand, within RS_RS01135 at 253.693 kb on + strand, within RS_RS01135 at 253.694 kb on - strand, within RS_RS01135 at 253.694 kb on - strand, within RS_RS01135 at 253.694 kb on - strand, within RS_RS01135 at 253.788 kb on - strand, within RS_RS01135 at 253.981 kb on + strand at 253.981 kb on + strand at 253.982 kb on - strand at 253.982 kb on - strand at 253.982 kb on - strand at 253.982 kb on - strand at 253.982 kb on - strand at 254.163 kb on + strand at 254.177 kb on + strand at 254.178 kb on - strand at 254.197 kb on - strand at 254.278 kb on + strand at 254.279 kb on - strand at 254.287 kb on - strand at 254.287 kb on - strand at 254.359 kb on + strand at 254.359 kb on + strand at 254.378 kb on - strand at 254.532 kb on - strand, within RS_RS01140 at 254.618 kb on - strand, within RS_RS01140 at 254.671 kb on + strand, within RS_RS01140 at 254.671 kb on + strand, within RS_RS01140 at 254.924 kb on + strand, within RS_RS01140 at 254.924 kb on + strand, within RS_RS01140 at 254.925 kb on - strand, within RS_RS01140 at 254.927 kb on + strand, within RS_RS01140 at 254.927 kb on + strand, within RS_RS01140
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 252,450 + RS_RS01130 0.29 -0.6 252,450 + RS_RS01130 0.29 -0.9 252,450 + RS_RS01130 0.29 +0.9 252,450 + RS_RS01130 0.29 +1.6 252,450 + RS_RS01130 0.29 +0.4 252,450 + RS_RS01130 0.29 -0.0 252,450 + RS_RS01130 0.29 -0.4 252,450 + RS_RS01130 0.29 -0.3 252,451 - RS_RS01130 0.29 +0.9 252,451 - RS_RS01130 0.29 +1.8 252,451 - RS_RS01130 0.29 -0.8 252,451 - RS_RS01130 0.29 -0.1 252,451 - RS_RS01130 0.29 -1.2 252,451 - RS_RS01130 0.29 -0.3 252,456 + RS_RS01130 0.30 +1.1 252,457 - RS_RS01130 0.30 +1.1 252,457 - RS_RS01130 0.30 +0.0 252,534 + RS_RS01130 0.36 -1.1 252,534 + RS_RS01130 0.36 +0.8 252,535 - RS_RS01130 0.37 -0.2 252,535 - RS_RS01130 0.37 -0.3 252,535 - RS_RS01130 0.37 +1.8 252,741 + RS_RS01130 0.54 +0.8 252,742 - RS_RS01130 0.54 +0.4 252,954 + RS_RS01130 0.72 +1.2 252,954 + RS_RS01130 0.72 -1.6 252,955 - RS_RS01130 0.72 -0.1 252,955 - RS_RS01130 0.72 -0.7 252,955 - RS_RS01130 0.72 -0.6 253,430 - RS_RS01135 0.20 -0.8 253,685 - RS_RS01135 0.60 -0.2 253,685 - RS_RS01135 0.60 -0.3 253,693 + RS_RS01135 0.61 -0.1 253,694 - RS_RS01135 0.62 -0.4 253,694 - RS_RS01135 0.62 +1.2 253,694 - RS_RS01135 0.62 -0.8 253,788 - RS_RS01135 0.76 -0.8 253,981 + -0.4 253,981 + -0.8 253,982 - +0.4 253,982 - +1.8 253,982 - -0.4 253,982 - +1.0 253,982 - -1.4 254,163 + +1.8 254,177 + +1.3 254,178 - +0.2 254,197 - +0.3 254,278 + +0.8 254,279 - +2.2 254,287 - -0.2 254,287 - -1.2 254,359 + +0.4 254,359 + -0.2 254,378 - -0.8 254,532 - RS_RS01140 0.21 +0.1 254,618 - RS_RS01140 0.32 -0.7 254,671 + RS_RS01140 0.39 -0.2 254,671 + RS_RS01140 0.39 +1.3 254,924 + RS_RS01140 0.70 -0.1 254,924 + RS_RS01140 0.70 +1.8 254,925 - RS_RS01140 0.70 +1.2 254,927 + RS_RS01140 0.70 -0.5 254,927 + RS_RS01140 0.70 +1.0
Or see this region's nucleotide sequence