Experiment: Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS21600 and RS_RS21605 are separated by 12 nucleotides RS_RS21605 and RS_RS21610 are separated by 1 nucleotides RS_RS21610 and RS_RS21615 overlap by 4 nucleotides RS_RS21615 and RS_RS21620 are separated by 25 nucleotides
RS_RS21600: RS_RS21600 - hypothetical protein, at 1,183,372 to 1,184,154
_RS21600
RS_RS21605: RS_RS21605 - biotin carboxyl carrier protein of acetyl-COA carboxylase, at 1,184,167 to 1,184,598
_RS21605
RS_RS21610: RS_RS21610 - hypothetical protein, at 1,184,600 to 1,185,592
_RS21610
RS_RS21615: RS_RS21615 - allophanate hydrolase, at 1,185,589 to 1,186,248
_RS21615
RS_RS21620: RS_RS21620 - acetyl-CoA carboxylase biotin carboxylase subunit, at 1,186,274 to 1,187,641
_RS21620
Position (kb) 1184
1185
1186 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1183.889 kb on + strand, within RS_RS21600 at 1183.889 kb on + strand, within RS_RS21600 at 1183.889 kb on + strand, within RS_RS21600 at 1183.889 kb on + strand, within RS_RS21600 at 1183.890 kb on - strand, within RS_RS21600 at 1183.890 kb on - strand, within RS_RS21600 at 1183.890 kb on - strand, within RS_RS21600 at 1183.890 kb on - strand, within RS_RS21600 at 1184.118 kb on - strand at 1184.118 kb on - strand at 1184.176 kb on - strand at 1184.176 kb on - strand at 1184.548 kb on - strand, within RS_RS21605 at 1184.548 kb on - strand, within RS_RS21605 at 1184.548 kb on - strand, within RS_RS21605 at 1184.707 kb on + strand, within RS_RS21610 at 1184.994 kb on + strand, within RS_RS21610 at 1184.995 kb on - strand, within RS_RS21610 at 1185.003 kb on + strand, within RS_RS21610 at 1185.004 kb on - strand, within RS_RS21610 at 1185.194 kb on - strand, within RS_RS21610 at 1185.247 kb on - strand, within RS_RS21610 at 1185.247 kb on - strand, within RS_RS21610 at 1185.830 kb on + strand, within RS_RS21615 at 1185.830 kb on + strand, within RS_RS21615 at 1185.831 kb on - strand, within RS_RS21615 at 1185.831 kb on - strand, within RS_RS21615 at 1185.836 kb on + strand, within RS_RS21615 at 1185.837 kb on - strand, within RS_RS21615 at 1185.870 kb on - strand, within RS_RS21615 at 1185.870 kb on - strand, within RS_RS21615 at 1186.227 kb on + strand at 1186.289 kb on - strand at 1186.500 kb on + strand, within RS_RS21620
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 1,183,889 + RS_RS21600 0.66 -0.5 1,183,889 + RS_RS21600 0.66 -1.3 1,183,889 + RS_RS21600 0.66 +0.7 1,183,889 + RS_RS21600 0.66 -0.7 1,183,890 - RS_RS21600 0.66 -1.3 1,183,890 - RS_RS21600 0.66 -0.0 1,183,890 - RS_RS21600 0.66 -2.0 1,183,890 - RS_RS21600 0.66 -1.6 1,184,118 - -1.4 1,184,118 - +1.0 1,184,176 - -4.5 1,184,176 - -1.0 1,184,548 - RS_RS21605 0.88 +2.5 1,184,548 - RS_RS21605 0.88 +0.6 1,184,548 - RS_RS21605 0.88 +0.4 1,184,707 + RS_RS21610 0.11 -0.3 1,184,994 + RS_RS21610 0.40 +1.0 1,184,995 - RS_RS21610 0.40 +0.7 1,185,003 + RS_RS21610 0.41 -2.2 1,185,004 - RS_RS21610 0.41 -1.4 1,185,194 - RS_RS21610 0.60 +2.3 1,185,247 - RS_RS21610 0.65 +0.8 1,185,247 - RS_RS21610 0.65 +1.0 1,185,830 + RS_RS21615 0.37 -0.6 1,185,830 + RS_RS21615 0.37 +1.0 1,185,831 - RS_RS21615 0.37 -0.3 1,185,831 - RS_RS21615 0.37 +1.0 1,185,836 + RS_RS21615 0.37 +1.0 1,185,837 - RS_RS21615 0.38 +0.7 1,185,870 - RS_RS21615 0.43 -1.0 1,185,870 - RS_RS21615 0.43 -1.4 1,186,227 + -0.0 1,186,289 - +0.7 1,186,500 + RS_RS21620 0.17 +0.0
Or see this region's nucleotide sequence