Experiment: Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS20435 and RS_RS20440 are separated by 240 nucleotides RS_RS20440 and RS_RS20445 are separated by 536 nucleotides
RS_RS20435: RS_RS20435 - homogentisate 1,2-dioxygenase, at 878,028 to 879,374
_RS20435
RS_RS20440: RS_RS20440 - LysR family transcriptional regulator, at 879,615 to 880,544
_RS20440
RS_RS20445: RS_RS20445 - VOC family protein, at 881,081 to 881,623
_RS20445
Position (kb) 879
880
881 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 878.639 kb on - strand, within RS_RS20435 at 878.744 kb on - strand, within RS_RS20435 at 878.899 kb on + strand, within RS_RS20435 at 878.899 kb on + strand, within RS_RS20435 at 878.899 kb on + strand, within RS_RS20435 at 878.900 kb on - strand, within RS_RS20435 at 878.935 kb on + strand, within RS_RS20435 at 878.936 kb on - strand, within RS_RS20435 at 878.938 kb on - strand, within RS_RS20435 at 879.148 kb on + strand, within RS_RS20435 at 879.214 kb on + strand, within RS_RS20435 at 879.215 kb on - strand, within RS_RS20435 at 879.310 kb on + strand at 879.310 kb on + strand at 879.536 kb on + strand at 879.536 kb on + strand at 879.594 kb on - strand at 879.945 kb on + strand, within RS_RS20440 at 879.945 kb on + strand, within RS_RS20440 at 879.945 kb on + strand, within RS_RS20440 at 879.945 kb on + strand, within RS_RS20440 at 879.945 kb on + strand, within RS_RS20440 at 879.946 kb on - strand, within RS_RS20440 at 879.946 kb on - strand, within RS_RS20440 at 879.946 kb on - strand, within RS_RS20440 at 879.946 kb on - strand, within RS_RS20440 at 879.946 kb on - strand, within RS_RS20440 at 879.946 kb on - strand, within RS_RS20440 at 880.131 kb on + strand, within RS_RS20440 at 880.132 kb on - strand, within RS_RS20440 at 880.332 kb on + strand, within RS_RS20440 at 880.333 kb on - strand, within RS_RS20440 at 880.611 kb on + strand at 880.612 kb on - strand at 880.896 kb on - strand at 881.008 kb on - strand at 881.008 kb on - strand at 881.008 kb on - strand at 881.144 kb on + strand, within RS_RS20445 at 881.144 kb on + strand, within RS_RS20445 at 881.255 kb on + strand, within RS_RS20445 at 881.255 kb on + strand, within RS_RS20445 at 881.255 kb on + strand, within RS_RS20445 at 881.255 kb on + strand, within RS_RS20445 at 881.255 kb on + strand, within RS_RS20445 at 881.256 kb on - strand, within RS_RS20445 at 881.256 kb on - strand, within RS_RS20445 at 881.442 kb on - strand, within RS_RS20445 at 881.534 kb on + strand, within RS_RS20445
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 878,639 - RS_RS20435 0.45 -2.9 878,744 - RS_RS20435 0.53 +0.6 878,899 + RS_RS20435 0.65 -2.0 878,899 + RS_RS20435 0.65 +1.0 878,899 + RS_RS20435 0.65 -0.6 878,900 - RS_RS20435 0.65 +1.0 878,935 + RS_RS20435 0.67 -1.0 878,936 - RS_RS20435 0.67 -2.1 878,938 - RS_RS20435 0.68 -1.7 879,148 + RS_RS20435 0.83 +1.0 879,214 + RS_RS20435 0.88 +1.0 879,215 - RS_RS20435 0.88 -0.8 879,310 + +1.0 879,310 + -3.4 879,536 + -0.8 879,536 + +0.4 879,594 - -1.4 879,945 + RS_RS20440 0.35 -1.8 879,945 + RS_RS20440 0.35 +1.0 879,945 + RS_RS20440 0.35 -1.7 879,945 + RS_RS20440 0.35 -1.0 879,945 + RS_RS20440 0.35 -1.0 879,946 - RS_RS20440 0.36 +1.5 879,946 - RS_RS20440 0.36 -1.3 879,946 - RS_RS20440 0.36 +1.0 879,946 - RS_RS20440 0.36 +1.0 879,946 - RS_RS20440 0.36 +1.0 879,946 - RS_RS20440 0.36 +1.0 880,131 + RS_RS20440 0.55 +0.0 880,132 - RS_RS20440 0.56 -0.4 880,332 + RS_RS20440 0.77 +1.0 880,333 - RS_RS20440 0.77 -2.0 880,611 + +1.0 880,612 - -1.1 880,896 - -0.1 881,008 - +1.0 881,008 - +0.0 881,008 - +1.0 881,144 + RS_RS20445 0.12 +1.0 881,144 + RS_RS20445 0.12 +0.3 881,255 + RS_RS20445 0.32 -0.5 881,255 + RS_RS20445 0.32 +1.0 881,255 + RS_RS20445 0.32 +0.4 881,255 + RS_RS20445 0.32 +0.0 881,255 + RS_RS20445 0.32 -2.2 881,256 - RS_RS20445 0.32 -3.2 881,256 - RS_RS20445 0.32 -0.1 881,442 - RS_RS20445 0.66 -1.4 881,534 + RS_RS20445 0.83 -0.9
Or see this region's nucleotide sequence