Experiment: Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18775 and RS_RS18780 are separated by 517 nucleotides RS_RS18780 and RS_RS18785 are separated by 115 nucleotides RS_RS18785 and RS_RS18790 are separated by 102 nucleotides
RS_RS18775: RS_RS18775 - DNA-binding response regulator, at 444,706 to 445,386
_RS18775
RS_RS18780: RS_RS18780 - flagellar protein FlgN, at 445,904 to 446,365
_RS18780
RS_RS18785: RS_RS18785 - flagellar biosynthesis anti-sigma factor FlgM, at 446,481 to 446,801
_RS18785
RS_RS18790: RS_RS18790 - flagella basal body P-ring formation protein FlgA, at 446,904 to 447,791
_RS18790
Position (kb) 445
446
447 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 444.944 kb on + strand, within RS_RS18775 at 445.011 kb on + strand, within RS_RS18775 at 445.028 kb on - strand, within RS_RS18775 at 445.042 kb on + strand, within RS_RS18775 at 445.042 kb on + strand, within RS_RS18775 at 445.046 kb on + strand, within RS_RS18775 at 445.046 kb on + strand, within RS_RS18775 at 445.046 kb on + strand, within RS_RS18775 at 445.047 kb on - strand, within RS_RS18775 at 445.047 kb on - strand, within RS_RS18775 at 445.047 kb on - strand, within RS_RS18775 at 445.064 kb on - strand, within RS_RS18775 at 445.064 kb on - strand, within RS_RS18775 at 445.066 kb on + strand, within RS_RS18775 at 445.067 kb on - strand, within RS_RS18775 at 445.100 kb on + strand, within RS_RS18775 at 445.100 kb on + strand, within RS_RS18775 at 445.100 kb on + strand, within RS_RS18775 at 445.115 kb on + strand, within RS_RS18775 at 445.115 kb on + strand, within RS_RS18775 at 445.116 kb on - strand, within RS_RS18775 at 445.125 kb on + strand, within RS_RS18775 at 445.185 kb on + strand, within RS_RS18775 at 445.185 kb on + strand, within RS_RS18775 at 445.186 kb on - strand, within RS_RS18775 at 445.186 kb on - strand, within RS_RS18775 at 445.186 kb on - strand, within RS_RS18775 at 445.186 kb on - strand, within RS_RS18775 at 445.186 kb on - strand, within RS_RS18775 at 445.186 kb on - strand, within RS_RS18775 at 445.230 kb on + strand, within RS_RS18775 at 445.440 kb on + strand at 445.440 kb on + strand at 445.440 kb on + strand at 445.440 kb on + strand at 445.440 kb on + strand at 445.441 kb on - strand at 445.441 kb on - strand at 445.479 kb on + strand at 445.480 kb on - strand at 445.480 kb on - strand at 445.545 kb on - strand at 445.723 kb on + strand at 445.766 kb on + strand at 445.770 kb on + strand at 445.771 kb on - strand at 445.906 kb on - strand at 445.962 kb on + strand, within RS_RS18780 at 445.962 kb on + strand, within RS_RS18780 at 445.962 kb on + strand, within RS_RS18780 at 445.963 kb on - strand, within RS_RS18780 at 446.133 kb on + strand, within RS_RS18780 at 446.134 kb on - strand, within RS_RS18780 at 446.352 kb on - strand at 446.445 kb on + strand at 446.445 kb on + strand at 446.445 kb on + strand at 446.446 kb on - strand at 446.446 kb on - strand at 446.446 kb on - strand at 446.446 kb on - strand at 446.829 kb on + strand at 446.829 kb on + strand at 446.829 kb on + strand at 446.829 kb on + strand at 446.829 kb on + strand at 446.830 kb on - strand at 446.830 kb on - strand at 446.830 kb on - strand at 446.830 kb on - strand at 446.830 kb on - strand at 446.830 kb on - strand at 446.863 kb on + strand at 446.864 kb on - strand at 446.896 kb on + strand at 446.896 kb on + strand at 446.898 kb on + strand at 447.271 kb on + strand, within RS_RS18790 at 447.271 kb on + strand, within RS_RS18790 at 447.271 kb on + strand, within RS_RS18790 at 447.272 kb on - strand, within RS_RS18790 at 447.272 kb on - strand, within RS_RS18790 at 447.274 kb on + strand, within RS_RS18790 at 447.274 kb on + strand, within RS_RS18790 at 447.274 kb on + strand, within RS_RS18790 at 447.274 kb on + strand, within RS_RS18790 at 447.274 kb on + strand, within RS_RS18790 at 447.275 kb on - strand, within RS_RS18790 at 447.275 kb on - strand, within RS_RS18790 at 447.275 kb on - strand, within RS_RS18790 at 447.351 kb on + strand, within RS_RS18790 at 447.351 kb on + strand, within RS_RS18790 at 447.351 kb on + strand, within RS_RS18790 at 447.351 kb on + strand, within RS_RS18790 at 447.351 kb on + strand, within RS_RS18790 at 447.351 kb on + strand, within RS_RS18790 at 447.351 kb on + strand, within RS_RS18790 at 447.352 kb on - strand, within RS_RS18790 at 447.352 kb on - strand, within RS_RS18790 at 447.352 kb on - strand, within RS_RS18790 at 447.352 kb on - strand, within RS_RS18790 at 447.352 kb on - strand, within RS_RS18790
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 444,944 + RS_RS18775 0.35 -0.2 445,011 + RS_RS18775 0.45 -0.2 445,028 - RS_RS18775 0.47 -0.2 445,042 + RS_RS18775 0.49 -0.3 445,042 + RS_RS18775 0.49 -0.2 445,046 + RS_RS18775 0.50 -1.2 445,046 + RS_RS18775 0.50 -0.5 445,046 + RS_RS18775 0.50 +1.2 445,047 - RS_RS18775 0.50 -0.5 445,047 - RS_RS18775 0.50 -0.8 445,047 - RS_RS18775 0.50 -0.9 445,064 - RS_RS18775 0.53 -0.9 445,064 - RS_RS18775 0.53 -0.7 445,066 + RS_RS18775 0.53 -0.4 445,067 - RS_RS18775 0.53 -0.0 445,100 + RS_RS18775 0.58 +1.2 445,100 + RS_RS18775 0.58 -0.6 445,100 + RS_RS18775 0.58 -0.1 445,115 + RS_RS18775 0.60 -0.4 445,115 + RS_RS18775 0.60 -1.5 445,116 - RS_RS18775 0.60 +1.2 445,125 + RS_RS18775 0.62 -0.5 445,185 + RS_RS18775 0.70 -0.7 445,185 + RS_RS18775 0.70 +0.2 445,186 - RS_RS18775 0.70 -1.8 445,186 - RS_RS18775 0.70 -2.0 445,186 - RS_RS18775 0.70 -1.8 445,186 - RS_RS18775 0.70 +0.2 445,186 - RS_RS18775 0.70 -0.7 445,186 - RS_RS18775 0.70 -0.4 445,230 + RS_RS18775 0.77 -0.4 445,440 + +1.2 445,440 + -0.8 445,440 + -0.4 445,440 + +1.2 445,440 + -0.2 445,441 - +0.8 445,441 - -2.9 445,479 + -0.8 445,480 - -0.0 445,480 - -0.8 445,545 - -0.3 445,723 + -0.3 445,766 + -1.8 445,770 + -0.5 445,771 - -0.8 445,906 - -0.8 445,962 + RS_RS18780 0.13 -1.0 445,962 + RS_RS18780 0.13 -0.9 445,962 + RS_RS18780 0.13 +1.2 445,963 - RS_RS18780 0.13 -0.3 446,133 + RS_RS18780 0.50 -0.1 446,134 - RS_RS18780 0.50 -0.8 446,352 - +1.2 446,445 + -0.4 446,445 + +0.1 446,445 + -1.1 446,446 - -0.5 446,446 - -0.6 446,446 - -2.4 446,446 - -0.2 446,829 + +1.2 446,829 + -0.6 446,829 + +1.5 446,829 + -0.2 446,829 + +1.2 446,830 - +1.2 446,830 - -0.7 446,830 - -3.2 446,830 - -1.8 446,830 - +0.5 446,830 - -2.5 446,863 + +1.2 446,864 - +0.6 446,896 + +0.2 446,896 + -1.0 446,898 + -1.9 447,271 + RS_RS18790 0.41 -1.3 447,271 + RS_RS18790 0.41 +1.2 447,271 + RS_RS18790 0.41 +1.2 447,272 - RS_RS18790 0.41 -0.7 447,272 - RS_RS18790 0.41 -0.2 447,274 + RS_RS18790 0.42 -1.6 447,274 + RS_RS18790 0.42 +2.2 447,274 + RS_RS18790 0.42 +1.2 447,274 + RS_RS18790 0.42 -0.2 447,274 + RS_RS18790 0.42 +1.2 447,275 - RS_RS18790 0.42 -0.8 447,275 - RS_RS18790 0.42 -0.8 447,275 - RS_RS18790 0.42 -0.2 447,351 + RS_RS18790 0.50 +2.7 447,351 + RS_RS18790 0.50 +1.2 447,351 + RS_RS18790 0.50 +2.7 447,351 + RS_RS18790 0.50 -0.9 447,351 + RS_RS18790 0.50 -0.6 447,351 + RS_RS18790 0.50 +0.3 447,351 + RS_RS18790 0.50 +1.2 447,352 - RS_RS18790 0.50 -0.2 447,352 - RS_RS18790 0.50 -0.1 447,352 - RS_RS18790 0.50 +1.2 447,352 - RS_RS18790 0.50 -1.2 447,352 - RS_RS18790 0.50 -0.4
Or see this region's nucleotide sequence