Experiment: Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18245 and RS_RS18250 are separated by 15 nucleotides RS_RS18250 and RS_RS18255 are separated by 288 nucleotides
RS_RS18245: RS_RS18245 - feruloyl-CoA synthase, at 282,389 to 284,263
_RS18245
RS_RS18250: RS_RS18250 - sigma-54-dependent Fis family transcriptional regulator, at 284,279 to 286,150
_RS18250
RS_RS18255: RS_RS18255 - benzaldehyde dehydrogenase, at 286,439 to 287,917
_RS18255
Position (kb) 284
285
286
287 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 283.328 kb on + strand, within RS_RS18245 at 283.404 kb on - strand, within RS_RS18245 at 283.404 kb on - strand, within RS_RS18245 at 283.584 kb on - strand, within RS_RS18245 at 283.584 kb on - strand, within RS_RS18245 at 283.680 kb on - strand, within RS_RS18245 at 283.886 kb on + strand, within RS_RS18245 at 284.210 kb on + strand at 284.210 kb on + strand at 284.210 kb on + strand at 284.211 kb on - strand at 284.686 kb on + strand, within RS_RS18250 at 284.703 kb on + strand, within RS_RS18250 at 284.703 kb on + strand, within RS_RS18250 at 284.703 kb on + strand, within RS_RS18250 at 284.703 kb on + strand, within RS_RS18250 at 284.703 kb on + strand, within RS_RS18250 at 284.704 kb on - strand, within RS_RS18250 at 284.704 kb on - strand, within RS_RS18250 at 285.664 kb on - strand, within RS_RS18250 at 285.664 kb on - strand, within RS_RS18250 at 285.721 kb on - strand, within RS_RS18250 at 285.721 kb on - strand, within RS_RS18250 at 285.741 kb on + strand, within RS_RS18250 at 285.741 kb on + strand, within RS_RS18250 at 285.741 kb on + strand, within RS_RS18250 at 285.741 kb on + strand, within RS_RS18250 at 285.877 kb on - strand, within RS_RS18250 at 286.020 kb on + strand at 286.020 kb on + strand at 286.020 kb on + strand at 286.020 kb on + strand at 286.021 kb on - strand at 286.187 kb on - strand at 286.226 kb on + strand at 286.871 kb on + strand, within RS_RS18255 at 286.872 kb on - strand, within RS_RS18255
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 283,328 + RS_RS18245 0.50 +0.0 283,404 - RS_RS18245 0.54 -0.8 283,404 - RS_RS18245 0.54 +0.2 283,584 - RS_RS18245 0.64 +0.2 283,584 - RS_RS18245 0.64 +1.2 283,680 - RS_RS18245 0.69 -0.8 283,886 + RS_RS18245 0.80 +1.2 284,210 + -0.3 284,210 + -0.8 284,210 + -0.8 284,211 - +1.2 284,686 + RS_RS18250 0.22 -0.3 284,703 + RS_RS18250 0.23 +0.6 284,703 + RS_RS18250 0.23 +0.2 284,703 + RS_RS18250 0.23 +1.2 284,703 + RS_RS18250 0.23 +1.2 284,703 + RS_RS18250 0.23 +0.6 284,704 - RS_RS18250 0.23 -0.1 284,704 - RS_RS18250 0.23 -1.5 285,664 - RS_RS18250 0.74 +1.2 285,664 - RS_RS18250 0.74 -0.5 285,721 - RS_RS18250 0.77 +1.2 285,721 - RS_RS18250 0.77 -3.2 285,741 + RS_RS18250 0.78 +0.2 285,741 + RS_RS18250 0.78 -0.8 285,741 + RS_RS18250 0.78 +0.9 285,741 + RS_RS18250 0.78 -1.2 285,877 - RS_RS18250 0.85 -1.5 286,020 + -1.6 286,020 + +0.2 286,020 + +1.4 286,020 + +2.1 286,021 - +1.2 286,187 - -0.7 286,226 + +1.2 286,871 + RS_RS18255 0.29 +0.0 286,872 - RS_RS18255 0.29 +0.2
Or see this region's nucleotide sequence