Experiment: Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS17705 and RS_RS17710 are separated by 618 nucleotides RS_RS17710 and RS_RS25935 are separated by 115 nucleotides RS_RS25935 and RS_RS17715 overlap by 70 nucleotides RS_RS17715 and RS_RS17720 are separated by 84 nucleotides
RS_RS17705: RS_RS17705 - hypothetical protein, at 132,374 to 132,781
_RS17705
RS_RS17710: RS_RS17710 - hypothetical protein, at 133,400 to 134,683
_RS17710
RS_RS25935: RS_RS25935 - hypothetical protein, at 134,799 to 134,993
_RS25935
RS_RS17715: RS_RS17715 - hypothetical protein, at 134,924 to 135,205
_RS17715
RS_RS17720: RS_RS17720 - hypothetical protein, at 135,290 to 135,673
_RS17720
Position (kb) 133
134
135 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 133.000 kb on - strand at 133.021 kb on - strand at 133.131 kb on + strand at 133.287 kb on + strand at 133.287 kb on + strand at 133.358 kb on - strand at 133.771 kb on + strand, within RS_RS17710 at 133.978 kb on + strand, within RS_RS17710 at 133.978 kb on + strand, within RS_RS17710 at 133.978 kb on + strand, within RS_RS17710 at 133.979 kb on - strand, within RS_RS17710 at 134.108 kb on - strand, within RS_RS17710 at 134.305 kb on + strand, within RS_RS17710 at 134.306 kb on - strand, within RS_RS17710 at 134.306 kb on - strand, within RS_RS17710 at 134.666 kb on - strand at 134.666 kb on - strand at 134.765 kb on - strand at 134.835 kb on + strand, within RS_RS25935 at 134.836 kb on - strand, within RS_RS25935 at 134.885 kb on + strand, within RS_RS25935 at 134.885 kb on + strand, within RS_RS25935 at 134.885 kb on + strand, within RS_RS25935 at 134.886 kb on - strand, within RS_RS25935 at 134.886 kb on - strand, within RS_RS25935 at 134.886 kb on - strand, within RS_RS25935 at 134.961 kb on + strand at 135.107 kb on + strand, within RS_RS17715 at 135.107 kb on + strand, within RS_RS17715 at 135.107 kb on + strand, within RS_RS17715 at 135.166 kb on + strand, within RS_RS17715 at 135.250 kb on + strand at 135.250 kb on + strand at 135.252 kb on + strand at 135.253 kb on - strand at 135.253 kb on - strand at 135.253 kb on - strand at 135.338 kb on + strand, within RS_RS17720 at 135.339 kb on - strand, within RS_RS17720 at 135.339 kb on - strand, within RS_RS17720 at 135.380 kb on + strand, within RS_RS17720 at 135.380 kb on + strand, within RS_RS17720 at 135.417 kb on - strand, within RS_RS17720 at 135.417 kb on - strand, within RS_RS17720 at 135.479 kb on - strand, within RS_RS17720 at 135.566 kb on + strand, within RS_RS17720 at 135.566 kb on + strand, within RS_RS17720 at 135.566 kb on + strand, within RS_RS17720 at 135.566 kb on + strand, within RS_RS17720 at 135.567 kb on - strand, within RS_RS17720 at 135.567 kb on - strand, within RS_RS17720 at 135.567 kb on - strand, within RS_RS17720 at 135.567 kb on - strand, within RS_RS17720 at 135.593 kb on + strand, within RS_RS17720
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 133,000 - -1.6 133,021 - -0.8 133,131 + -0.7 133,287 + -1.8 133,287 + +0.2 133,358 - +1.2 133,771 + RS_RS17710 0.29 +1.2 133,978 + RS_RS17710 0.45 +1.2 133,978 + RS_RS17710 0.45 -1.4 133,978 + RS_RS17710 0.45 +1.2 133,979 - RS_RS17710 0.45 -0.4 134,108 - RS_RS17710 0.55 +1.2 134,305 + RS_RS17710 0.70 -1.2 134,306 - RS_RS17710 0.71 -0.2 134,306 - RS_RS17710 0.71 -3.3 134,666 - +0.3 134,666 - -1.1 134,765 - -1.1 134,835 + RS_RS25935 0.18 -1.3 134,836 - RS_RS25935 0.19 +0.6 134,885 + RS_RS25935 0.44 -0.3 134,885 + RS_RS25935 0.44 -2.3 134,885 + RS_RS25935 0.44 +0.1 134,886 - RS_RS25935 0.45 +0.2 134,886 - RS_RS25935 0.45 +0.6 134,886 - RS_RS25935 0.45 +3.2 134,961 + +0.2 135,107 + RS_RS17715 0.65 -1.6 135,107 + RS_RS17715 0.65 +1.3 135,107 + RS_RS17715 0.65 +1.2 135,166 + RS_RS17715 0.86 -0.8 135,250 + -0.8 135,250 + -1.4 135,252 + -2.1 135,253 - +1.2 135,253 - +1.2 135,253 - +3.2 135,338 + RS_RS17720 0.12 +1.2 135,339 - RS_RS17720 0.13 +1.2 135,339 - RS_RS17720 0.13 -2.1 135,380 + RS_RS17720 0.23 -1.2 135,380 + RS_RS17720 0.23 +0.0 135,417 - RS_RS17720 0.33 -1.5 135,417 - RS_RS17720 0.33 +1.2 135,479 - RS_RS17720 0.49 -0.8 135,566 + RS_RS17720 0.72 -0.8 135,566 + RS_RS17720 0.72 -0.4 135,566 + RS_RS17720 0.72 +1.2 135,566 + RS_RS17720 0.72 +1.2 135,567 - RS_RS17720 0.72 -3.7 135,567 - RS_RS17720 0.72 -2.7 135,567 - RS_RS17720 0.72 +1.2 135,567 - RS_RS17720 0.72 +1.2 135,593 + RS_RS17720 0.79 +0.2
Or see this region's nucleotide sequence