Experiment: Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS16410 and RS_RS16415 are separated by 30 nucleotides RS_RS16415 and RS_RS16420 are separated by 7 nucleotides RS_RS16420 and RS_RS16425 are separated by 40 nucleotides RS_RS16425 and RS_RS16430 overlap by 23 nucleotides RS_RS16430 and RS_RS16435 are separated by 115 nucleotides
RS_RS16410: RS_RS16410 - C4-dicarboxylate transporter 2, at 3,526,243 to 3,527,583
_RS16410
RS_RS16415: RS_RS16415 - GntR family transcriptional regulator, at 3,527,614 to 3,528,303
_RS16415
RS_RS16420: RS_RS16420 - DUF1949 domain-containing protein, at 3,528,311 to 3,528,898
_RS16420
RS_RS16425: RS_RS16425 - XRE family transcriptional regulator, at 3,528,939 to 3,529,271
_RS16425
RS_RS16430: RS_RS16430 - type II toxin-antitoxin system RelE/ParE family toxin, at 3,529,249 to 3,529,521
_RS16430
RS_RS16435: RS_RS16435 - LysR family transcriptional regulator, at 3,529,637 to 3,530,548
_RS16435
Position (kb) 3528
3529 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3528.115 kb on + strand, within RS_RS16415 at 3528.115 kb on + strand, within RS_RS16415 at 3528.115 kb on + strand, within RS_RS16415 at 3528.115 kb on + strand, within RS_RS16415 at 3528.116 kb on - strand, within RS_RS16415 at 3528.128 kb on - strand, within RS_RS16415 at 3528.138 kb on - strand, within RS_RS16415 at 3528.138 kb on - strand, within RS_RS16415 at 3528.320 kb on + strand at 3528.320 kb on + strand at 3528.320 kb on + strand at 3528.321 kb on - strand at 3528.321 kb on - strand at 3528.321 kb on - strand at 3528.321 kb on - strand at 3528.597 kb on - strand, within RS_RS16420 at 3528.597 kb on - strand, within RS_RS16420 at 3528.792 kb on - strand, within RS_RS16420 at 3528.792 kb on - strand, within RS_RS16420 at 3529.033 kb on + strand, within RS_RS16425 at 3529.033 kb on + strand, within RS_RS16425 at 3529.130 kb on + strand, within RS_RS16425 at 3529.186 kb on + strand, within RS_RS16425 at 3529.186 kb on + strand, within RS_RS16425 at 3529.187 kb on - strand, within RS_RS16425 at 3529.187 kb on - strand, within RS_RS16425 at 3529.187 kb on - strand, within RS_RS16425 at 3529.251 kb on - strand at 3529.259 kb on + strand at 3529.260 kb on - strand at 3529.260 kb on - strand at 3529.260 kb on - strand at 3529.297 kb on + strand, within RS_RS16430 at 3529.297 kb on + strand, within RS_RS16430 at 3529.297 kb on + strand, within RS_RS16430 at 3529.298 kb on - strand, within RS_RS16430 at 3529.298 kb on - strand, within RS_RS16430 at 3529.365 kb on - strand, within RS_RS16430 at 3529.553 kb on - strand at 3529.671 kb on + strand at 3529.671 kb on + strand at 3529.671 kb on + strand at 3529.672 kb on - strand at 3529.734 kb on + strand, within RS_RS16435 at 3529.752 kb on + strand, within RS_RS16435
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 3,528,115 + RS_RS16415 0.73 -0.1 3,528,115 + RS_RS16415 0.73 -1.0 3,528,115 + RS_RS16415 0.73 -3.7 3,528,115 + RS_RS16415 0.73 +0.1 3,528,116 - RS_RS16415 0.73 -0.0 3,528,128 - RS_RS16415 0.74 -0.0 3,528,138 - RS_RS16415 0.76 -0.1 3,528,138 - RS_RS16415 0.76 +0.4 3,528,320 + +1.4 3,528,320 + -0.6 3,528,320 + -2.6 3,528,321 - -1.2 3,528,321 - +0.7 3,528,321 - -0.1 3,528,321 - +1.4 3,528,597 - RS_RS16420 0.49 +1.4 3,528,597 - RS_RS16420 0.49 +1.4 3,528,792 - RS_RS16420 0.82 -0.1 3,528,792 - RS_RS16420 0.82 +0.8 3,529,033 + RS_RS16425 0.28 +1.4 3,529,033 + RS_RS16425 0.28 +0.4 3,529,130 + RS_RS16425 0.57 -0.2 3,529,186 + RS_RS16425 0.74 -0.3 3,529,186 + RS_RS16425 0.74 -3.0 3,529,187 - RS_RS16425 0.74 +0.6 3,529,187 - RS_RS16425 0.74 -0.2 3,529,187 - RS_RS16425 0.74 +1.4 3,529,251 - +0.2 3,529,259 + -0.9 3,529,260 - +1.4 3,529,260 - +0.0 3,529,260 - -0.9 3,529,297 + RS_RS16430 0.18 -0.6 3,529,297 + RS_RS16430 0.18 -0.7 3,529,297 + RS_RS16430 0.18 -2.8 3,529,298 - RS_RS16430 0.18 -0.2 3,529,298 - RS_RS16430 0.18 -2.0 3,529,365 - RS_RS16430 0.42 -1.3 3,529,553 - +0.6 3,529,671 + -1.2 3,529,671 + +0.1 3,529,671 + -0.6 3,529,672 - -0.2 3,529,734 + RS_RS16435 0.11 -0.2 3,529,752 + RS_RS16435 0.13 +0.7
Or see this region's nucleotide sequence