Experiment: Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS06545 and RS_RS06550 are separated by 115 nucleotides RS_RS06550 and RS_RS06555 are separated by 93 nucleotides RS_RS06555 and RS_RS06560 are separated by 65 nucleotides RS_RS06560 and RS_RS06565 are separated by 3 nucleotides
RS_RS06545: RS_RS06545 - ferredoxin--NADP reductase, at 1,392,131 to 1,392,907
_RS06545
RS_RS06550: RS_RS06550 - asparaginase, at 1,393,023 to 1,394,018
_RS06550
RS_RS06555: RS_RS06555 - 30S ribosomal protein S6, at 1,394,112 to 1,394,480
_RS06555
RS_RS06560: RS_RS06560 - primosomal replication protein N, at 1,394,546 to 1,394,872
_RS06560
RS_RS06565: RS_RS06565 - 30S ribosomal protein S18, at 1,394,876 to 1,395,163
_RS06565
Position (kb) 1393
1394
1395 Strain fitness (log2 ratio) -2
-1
0
1 at 1392.034 kb on + strand at 1392.035 kb on - strand at 1392.905 kb on + strand at 1392.985 kb on - strand at 1393.539 kb on + strand, within RS_RS06550 at 1393.539 kb on + strand, within RS_RS06550 at 1393.699 kb on - strand, within RS_RS06550 at 1393.699 kb on - strand, within RS_RS06550
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 1,392,034 + +1.2 1,392,035 - -2.0 1,392,905 + -0.3 1,392,985 - +1.0 1,393,539 + RS_RS06550 0.52 +1.0 1,393,539 + RS_RS06550 0.52 -0.0 1,393,699 - RS_RS06550 0.68 -0.9 1,393,699 - RS_RS06550 0.68 -1.6
Or see this region's nucleotide sequence