Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS05285

Experiment: Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS05275 and RS_RS05280 overlap by 4 nucleotidesRS_RS05280 and RS_RS05285 overlap by 4 nucleotidesRS_RS05285 and RS_RS05290 overlap by 4 nucleotides RS_RS05275: RS_RS05275 - DNA repair protein RecO, at 1,118,280 to 1,119,098 _RS05275 RS_RS05280: RS_RS05280 - pyridoxine 5'-phosphate synthase, at 1,119,095 to 1,119,886 _RS05280 RS_RS05285: RS_RS05285 - holo-ACP synthase, at 1,119,883 to 1,120,326 _RS05285 RS_RS05290: RS_RS05290 - beta-N-acetylhexosaminidase, at 1,120,323 to 1,121,375 _RS05290 Position (kb) 1119 1120 1121Strain fitness (log2 ratio) -3 -2 -1 0 1at 1118.979 kb on + strand, within RS_RS05275at 1118.979 kb on + strand, within RS_RS05275at 1120.507 kb on + strand, within RS_RS05290at 1120.731 kb on + strand, within RS_RS05290at 1120.732 kb on - strand, within RS_RS05290at 1121.001 kb on + strand, within RS_RS05290at 1121.002 kb on - strand, within RS_RS05290at 1121.070 kb on + strand, within RS_RS05290at 1121.071 kb on - strand, within RS_RS05290

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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1,118,979 + RS_RS05275 0.85 +1.1
1,118,979 + RS_RS05275 0.85 +1.1
1,120,507 + RS_RS05290 0.17 -3.3
1,120,731 + RS_RS05290 0.39 -0.7
1,120,732 - RS_RS05290 0.39 -0.2
1,121,001 + RS_RS05290 0.64 -0.9
1,121,002 - RS_RS05290 0.64 -0.6
1,121,070 + RS_RS05290 0.71 +0.4
1,121,071 - RS_RS05290 0.71 +0.1

Or see this region's nucleotide sequence