Experiment: Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02775 and RS_RS02780 are separated by 84 nucleotides RS_RS02780 and RS_RS02785 are separated by 149 nucleotides
RS_RS02775: RS_RS02775 - succinyl-CoA ligase subunit beta, at 598,777 to 599,943
_RS02775
RS_RS02780: RS_RS02780 - succinate--CoA ligase subunit alpha, at 600,028 to 600,909
_RS02780
RS_RS02785: RS_RS02785 - hypothetical protein, at 601,059 to 601,757
_RS02785
Position (kb) 600
601 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 599.102 kb on - strand, within RS_RS02775 at 599.102 kb on - strand, within RS_RS02775 at 599.329 kb on + strand, within RS_RS02775 at 599.330 kb on - strand, within RS_RS02775 at 599.330 kb on - strand, within RS_RS02775 at 599.398 kb on - strand, within RS_RS02775 at 599.531 kb on - strand, within RS_RS02775 at 599.942 kb on - strand at 599.965 kb on - strand at 600.250 kb on + strand, within RS_RS02780 at 600.250 kb on + strand, within RS_RS02780 at 600.517 kb on + strand, within RS_RS02780 at 600.907 kb on + strand at 601.006 kb on + strand at 601.006 kb on + strand at 601.006 kb on + strand at 601.007 kb on - strand at 601.007 kb on - strand at 601.008 kb on + strand at 601.040 kb on + strand at 601.040 kb on + strand at 601.040 kb on + strand at 601.040 kb on + strand at 601.040 kb on + strand at 601.273 kb on - strand, within RS_RS02785 at 601.273 kb on - strand, within RS_RS02785 at 601.306 kb on - strand, within RS_RS02785 at 601.306 kb on - strand, within RS_RS02785 at 601.602 kb on + strand, within RS_RS02785 at 601.603 kb on - strand, within RS_RS02785 at 601.781 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 599,102 - RS_RS02775 0.28 -1.4 599,102 - RS_RS02775 0.28 -1.4 599,329 + RS_RS02775 0.47 +1.2 599,330 - RS_RS02775 0.47 -3.3 599,330 - RS_RS02775 0.47 -3.1 599,398 - RS_RS02775 0.53 -1.2 599,531 - RS_RS02775 0.65 -2.6 599,942 - +1.2 599,965 - -0.6 600,250 + RS_RS02780 0.25 +1.2 600,250 + RS_RS02780 0.25 -0.4 600,517 + RS_RS02780 0.55 -3.5 600,907 + +1.2 601,006 + -1.0 601,006 + +0.2 601,006 + +1.2 601,007 - -1.4 601,007 - -2.2 601,008 + -0.0 601,040 + +1.2 601,040 + -0.3 601,040 + -2.2 601,040 + -0.2 601,040 + +0.4 601,273 - RS_RS02785 0.31 -2.5 601,273 - RS_RS02785 0.31 -0.7 601,306 - RS_RS02785 0.35 -0.1 601,306 - RS_RS02785 0.35 +1.2 601,602 + RS_RS02785 0.78 +1.2 601,603 - RS_RS02785 0.78 -0.9 601,781 + -0.4
Or see this region's nucleotide sequence