Experiment: Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02630 and RS_RS02635 are separated by 185 nucleotides RS_RS02635 and RS_RS02640 are separated by 2 nucleotides RS_RS02640 and RS_RS02645 are separated by 11 nucleotides
RS_RS02630: RS_RS02630 - HlyC/CorC family transporter, at 566,799 to 567,695
_RS02630
RS_RS02635: RS_RS02635 - rRNA maturation RNase YbeY, at 567,881 to 568,648
_RS02635
RS_RS02640: RS_RS02640 - PhoH family protein, at 568,651 to 569,628
_RS02640
RS_RS02645: RS_RS02645 - tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB, at 569,640 to 571,013
_RS02645
Position (kb) 568
569
570 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 567.714 kb on + strand at 567.715 kb on - strand at 567.715 kb on - strand at 567.732 kb on - strand at 567.732 kb on - strand at 568.686 kb on - strand at 569.045 kb on + strand, within RS_RS02640 at 569.060 kb on + strand, within RS_RS02640 at 569.195 kb on + strand, within RS_RS02640 at 569.432 kb on + strand, within RS_RS02640 at 569.513 kb on - strand, within RS_RS02640 at 569.642 kb on - strand at 570.001 kb on + strand, within RS_RS02645 at 570.001 kb on + strand, within RS_RS02645 at 570.002 kb on - strand, within RS_RS02645 at 570.400 kb on + strand, within RS_RS02645 at 570.401 kb on - strand, within RS_RS02645 at 570.401 kb on - strand, within RS_RS02645 at 570.401 kb on - strand, within RS_RS02645 at 570.539 kb on - strand, within RS_RS02645
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 567,714 + +1.3 567,715 - +1.7 567,715 - +1.3 567,732 - +0.3 567,732 - -0.3 568,686 - +1.3 569,045 + RS_RS02640 0.40 +1.3 569,060 + RS_RS02640 0.42 -0.3 569,195 + RS_RS02640 0.56 -2.1 569,432 + RS_RS02640 0.80 -0.6 569,513 - RS_RS02640 0.88 -0.0 569,642 - -2.6 570,001 + RS_RS02645 0.26 +1.3 570,001 + RS_RS02645 0.26 -3.3 570,002 - RS_RS02645 0.26 +4.2 570,400 + RS_RS02645 0.55 +1.3 570,401 - RS_RS02645 0.55 -0.3 570,401 - RS_RS02645 0.55 +1.3 570,401 - RS_RS02645 0.55 +1.3 570,539 - RS_RS02645 0.65 -1.2
Or see this region's nucleotide sequence