Experiment: Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02160 and RS_RS02165 are separated by 232 nucleotides RS_RS02165 and RS_RS02170 are separated by 1 nucleotides RS_RS02170 and RS_RS02175 are separated by 205 nucleotides
RS_RS02160: RS_RS02160 - glycosyltransferase family 2 protein, at 464,288 to 465,061
_RS02160
RS_RS02165: RS_RS02165 - membrane protein, at 465,294 to 465,707
_RS02165
RS_RS02170: RS_RS02170 - hypothetical protein, at 465,709 to 466,143
_RS02170
RS_RS02175: RS_RS02175 - alpha/beta hydrolase, at 466,349 to 467,302
_RS02175
Position (kb) 465
466 Strain fitness (log2 ratio) -1
0
1 at 464.337 kb on - strand at 464.337 kb on - strand at 464.337 kb on - strand at 464.780 kb on + strand, within RS_RS02160 at 464.915 kb on + strand, within RS_RS02160 at 464.954 kb on + strand, within RS_RS02160 at 464.954 kb on + strand, within RS_RS02160 at 465.846 kb on - strand, within RS_RS02170 at 466.177 kb on - strand at 466.317 kb on + strand at 466.586 kb on + strand, within RS_RS02175 at 466.587 kb on - strand, within RS_RS02175
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 464,337 - -0.1 464,337 - -0.9 464,337 - +1.3 464,780 + RS_RS02160 0.64 -0.1 464,915 + RS_RS02160 0.81 +0.8 464,954 + RS_RS02160 0.86 +1.3 464,954 + RS_RS02160 0.86 -0.9 465,846 - RS_RS02170 0.31 -1.2 466,177 - -0.2 466,317 + +1.6 466,586 + RS_RS02175 0.25 +1.3 466,587 - RS_RS02175 0.25 +0.3
Or see this region's nucleotide sequence