Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS01155

Experiment: Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS01150 and RS_RS01155 are separated by 550 nucleotidesRS_RS01155 and RS_RS01160 are separated by 173 nucleotides RS_RS01150: RS_RS01150 - AraC family transcriptional regulator, at 256,430 to 257,176 _RS01150 RS_RS01155: RS_RS01155 - DUF427 domain-containing protein, at 257,727 to 258,083 _RS01155 RS_RS01160: RS_RS01160 - hypothetical protein, at 258,257 to 259,327 _RS01160 Position (kb) 257 258 259Strain fitness (log2 ratio) -2 -1 0 1 2 3at 256.752 kb on - strand, within RS_RS01150at 256.752 kb on - strand, within RS_RS01150at 256.752 kb on - strand, within RS_RS01150at 257.158 kb on - strandat 257.189 kb on + strandat 257.189 kb on + strandat 257.189 kb on + strandat 257.190 kb on - strandat 257.190 kb on - strandat 257.190 kb on - strandat 257.190 kb on - strandat 257.263 kb on - strandat 257.687 kb on + strandat 257.687 kb on + strandat 257.687 kb on + strandat 257.687 kb on + strandat 257.688 kb on - strandat 257.738 kb on + strandat 257.739 kb on - strandat 257.778 kb on + strand, within RS_RS01155at 257.779 kb on - strand, within RS_RS01155at 257.779 kb on - strand, within RS_RS01155at 257.809 kb on + strand, within RS_RS01155at 257.810 kb on - strand, within RS_RS01155at 257.810 kb on - strand, within RS_RS01155at 257.810 kb on - strand, within RS_RS01155at 257.810 kb on - strand, within RS_RS01155at 257.857 kb on + strand, within RS_RS01155at 257.857 kb on + strand, within RS_RS01155at 257.857 kb on + strand, within RS_RS01155at 257.857 kb on + strand, within RS_RS01155at 257.858 kb on - strand, within RS_RS01155at 257.858 kb on - strand, within RS_RS01155at 257.858 kb on - strand, within RS_RS01155at 257.858 kb on - strand, within RS_RS01155at 257.860 kb on + strand, within RS_RS01155at 257.944 kb on + strand, within RS_RS01155at 257.944 kb on + strand, within RS_RS01155at 257.945 kb on - strand, within RS_RS01155at 257.945 kb on - strand, within RS_RS01155at 257.945 kb on - strand, within RS_RS01155at 257.945 kb on - strand, within RS_RS01155at 257.946 kb on - strand, within RS_RS01155at 258.007 kb on + strand, within RS_RS01155at 258.144 kb on + strandat 258.144 kb on + strandat 258.144 kb on + strandat 258.145 kb on - strandat 258.145 kb on - strandat 258.145 kb on - strandat 258.145 kb on - strandat 258.145 kb on - strandat 258.145 kb on - strandat 258.259 kb on - strandat 258.339 kb on + strandat 258.340 kb on - strandat 258.340 kb on - strandat 258.494 kb on - strand, within RS_RS01160at 258.495 kb on + strand, within RS_RS01160at 258.495 kb on + strand, within RS_RS01160at 258.496 kb on - strand, within RS_RS01160at 258.870 kb on + strand, within RS_RS01160at 258.871 kb on - strand, within RS_RS01160at 258.871 kb on - strand, within RS_RS01160at 258.871 kb on - strand, within RS_RS01160at 258.926 kb on + strand, within RS_RS01160

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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256,752 - RS_RS01150 0.43 -0.8
256,752 - RS_RS01150 0.43 -0.6
256,752 - RS_RS01150 0.43 +1.4
257,158 - -0.9
257,189 + -0.3
257,189 + -2.0
257,189 + +0.7
257,190 - -0.6
257,190 - -2.6
257,190 - +0.7
257,190 - +1.4
257,263 - -0.2
257,687 + +0.2
257,687 + -1.9
257,687 + +0.4
257,687 + +1.4
257,688 - -2.4
257,738 + +1.4
257,739 - +0.7
257,778 + RS_RS01155 0.14 -0.4
257,779 - RS_RS01155 0.15 +0.2
257,779 - RS_RS01155 0.15 +1.4
257,809 + RS_RS01155 0.23 -0.6
257,810 - RS_RS01155 0.23 -0.5
257,810 - RS_RS01155 0.23 -0.1
257,810 - RS_RS01155 0.23 +1.4
257,810 - RS_RS01155 0.23 -0.2
257,857 + RS_RS01155 0.36 -0.4
257,857 + RS_RS01155 0.36 +0.4
257,857 + RS_RS01155 0.36 -1.2
257,857 + RS_RS01155 0.36 +0.4
257,858 - RS_RS01155 0.37 +1.4
257,858 - RS_RS01155 0.37 -0.0
257,858 - RS_RS01155 0.37 -1.4
257,858 - RS_RS01155 0.37 +0.4
257,860 + RS_RS01155 0.37 -1.4
257,944 + RS_RS01155 0.61 -0.4
257,944 + RS_RS01155 0.61 +1.4
257,945 - RS_RS01155 0.61 -0.8
257,945 - RS_RS01155 0.61 +1.4
257,945 - RS_RS01155 0.61 +1.4
257,945 - RS_RS01155 0.61 +0.8
257,946 - RS_RS01155 0.61 -1.3
258,007 + RS_RS01155 0.78 -1.1
258,144 + -0.5
258,144 + +1.4
258,144 + -0.4
258,145 - +3.0
258,145 - -1.2
258,145 - -1.8
258,145 - -0.3
258,145 - +0.1
258,145 - -2.0
258,259 - -1.3
258,339 + +1.4
258,340 - +1.4
258,340 - +1.0
258,494 - RS_RS01160 0.22 +0.1
258,495 + RS_RS01160 0.22 +3.7
258,495 + RS_RS01160 0.22 +2.0
258,496 - RS_RS01160 0.22 +2.4
258,870 + RS_RS01160 0.57 -0.2
258,871 - RS_RS01160 0.57 +1.7
258,871 - RS_RS01160 0.57 +0.7
258,871 - RS_RS01160 0.57 +1.4
258,926 + RS_RS01160 0.62 -0.2

Or see this region's nucleotide sequence