Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS25840

Experiment: Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS17295 and RS_RS25840 are separated by 874 nucleotidesRS_RS25840 and RS_RS17300 are separated by 678 nucleotides RS_RS17295: RS_RS17295 - chloride channel protein, at 23,682 to 25,067 _RS17295 RS_RS25840: RS_RS25840 - hypothetical protein, at 25,942 to 26,130 _RS25840 RS_RS17300: RS_RS17300 - hypothetical protein, at 26,809 to 27,570 _RS17300 Position (kb) 25 26 27Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 24.966 kb on + strandat 25.003 kb on - strandat 25.101 kb on + strandat 25.101 kb on + strandat 25.101 kb on + strandat 25.101 kb on + strandat 25.101 kb on + strandat 25.216 kb on + strandat 25.310 kb on + strandat 25.415 kb on - strandat 25.415 kb on - strandat 25.415 kb on - strandat 25.774 kb on - strandat 25.788 kb on - strandat 25.799 kb on - strandat 26.170 kb on + strandat 26.170 kb on + strandat 26.171 kb on - strandat 26.643 kb on + strandat 26.644 kb on - strandat 26.720 kb on + strandat 26.720 kb on + strandat 26.720 kb on + strandat 26.720 kb on + strandat 26.721 kb on - strandat 26.754 kb on + strandat 26.754 kb on + strandat 26.754 kb on + strandat 26.755 kb on - strandat 26.779 kb on + strandat 26.779 kb on + strandat 26.780 kb on - strandat 26.823 kb on + strandat 26.893 kb on + strand, within RS_RS17300at 26.893 kb on + strand, within RS_RS17300at 26.893 kb on + strand, within RS_RS17300at 26.893 kb on + strand, within RS_RS17300at 26.893 kb on + strand, within RS_RS17300at 26.893 kb on + strand, within RS_RS17300at 26.893 kb on + strand, within RS_RS17300at 26.893 kb on + strand, within RS_RS17300at 26.893 kb on + strand, within RS_RS17300at 26.894 kb on - strand, within RS_RS17300at 26.894 kb on - strand, within RS_RS17300at 26.894 kb on - strand, within RS_RS17300at 26.894 kb on - strand, within RS_RS17300at 26.894 kb on - strand, within RS_RS17300at 26.894 kb on - strand, within RS_RS17300at 26.894 kb on - strand, within RS_RS17300at 26.894 kb on - strand, within RS_RS17300at 26.894 kb on - strand, within RS_RS17300at 26.894 kb on - strand, within RS_RS17300at 26.894 kb on - strand, within RS_RS17300at 26.894 kb on - strand, within RS_RS17300at 26.894 kb on - strand, within RS_RS17300at 26.899 kb on + strand, within RS_RS17300at 26.899 kb on + strand, within RS_RS17300at 26.900 kb on - strand, within RS_RS17300at 27.016 kb on + strand, within RS_RS17300at 27.016 kb on + strand, within RS_RS17300at 27.016 kb on + strand, within RS_RS17300at 27.017 kb on - strand, within RS_RS17300at 27.017 kb on - strand, within RS_RS17300at 27.017 kb on - strand, within RS_RS17300at 27.068 kb on - strand, within RS_RS17300at 27.068 kb on - strand, within RS_RS17300at 27.071 kb on + strand, within RS_RS17300at 27.071 kb on + strand, within RS_RS17300at 27.071 kb on + strand, within RS_RS17300at 27.071 kb on + strand, within RS_RS17300at 27.071 kb on + strand, within RS_RS17300at 27.071 kb on + strand, within RS_RS17300at 27.071 kb on + strand, within RS_RS17300at 27.071 kb on + strand, within RS_RS17300at 27.072 kb on - strand, within RS_RS17300at 27.072 kb on - strand, within RS_RS17300at 27.072 kb on - strand, within RS_RS17300at 27.072 kb on - strand, within RS_RS17300at 27.127 kb on + strand, within RS_RS17300at 27.127 kb on + strand, within RS_RS17300at 27.127 kb on + strand, within RS_RS17300at 27.128 kb on - strand, within RS_RS17300at 27.128 kb on - strand, within RS_RS17300at 27.128 kb on - strand, within RS_RS17300at 27.128 kb on - strand, within RS_RS17300at 27.128 kb on - strand, within RS_RS17300at 27.128 kb on - strand, within RS_RS17300

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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24,966 + +1.2
25,003 - +1.2
25,101 + +1.2
25,101 + +1.2
25,101 + +0.2
25,101 + -0.8
25,101 + -1.2
25,216 + -0.2
25,310 + +1.6
25,415 - -0.4
25,415 - +0.5
25,415 - -0.1
25,774 - +1.2
25,788 - -0.2
25,799 - -0.8
26,170 + -0.3
26,170 + +0.5
26,171 - +1.2
26,643 + -0.7
26,644 - -0.8
26,720 + -0.5
26,720 + -0.5
26,720 + -0.8
26,720 + +1.2
26,721 - +1.2
26,754 + +1.2
26,754 + -1.9
26,754 + -0.0
26,755 - +1.2
26,779 + +1.2
26,779 + -0.8
26,780 - -0.8
26,823 + +0.5
26,893 + RS_RS17300 0.11 +1.0
26,893 + RS_RS17300 0.11 -0.2
26,893 + RS_RS17300 0.11 -0.8
26,893 + RS_RS17300 0.11 -0.8
26,893 + RS_RS17300 0.11 -0.1
26,893 + RS_RS17300 0.11 -0.7
26,893 + RS_RS17300 0.11 +3.0
26,893 + RS_RS17300 0.11 -1.2
26,893 + RS_RS17300 0.11 -0.9
26,894 - RS_RS17300 0.11 -1.2
26,894 - RS_RS17300 0.11 +1.2
26,894 - RS_RS17300 0.11 +1.2
26,894 - RS_RS17300 0.11 -1.5
26,894 - RS_RS17300 0.11 -0.7
26,894 - RS_RS17300 0.11 +0.2
26,894 - RS_RS17300 0.11 +1.2
26,894 - RS_RS17300 0.11 -1.0
26,894 - RS_RS17300 0.11 +1.2
26,894 - RS_RS17300 0.11 -0.2
26,894 - RS_RS17300 0.11 -0.4
26,894 - RS_RS17300 0.11 +0.1
26,894 - RS_RS17300 0.11 +1.1
26,899 + RS_RS17300 0.12 -0.4
26,899 + RS_RS17300 0.12 -1.8
26,900 - RS_RS17300 0.12 +1.2
27,016 + RS_RS17300 0.27 +0.9
27,016 + RS_RS17300 0.27 +1.2
27,016 + RS_RS17300 0.27 +1.2
27,017 - RS_RS17300 0.27 +0.5
27,017 - RS_RS17300 0.27 +0.2
27,017 - RS_RS17300 0.27 -1.6
27,068 - RS_RS17300 0.34 -0.9
27,068 - RS_RS17300 0.34 +0.4
27,071 + RS_RS17300 0.34 +1.2
27,071 + RS_RS17300 0.34 -1.7
27,071 + RS_RS17300 0.34 +0.3
27,071 + RS_RS17300 0.34 +1.2
27,071 + RS_RS17300 0.34 +1.2
27,071 + RS_RS17300 0.34 -1.4
27,071 + RS_RS17300 0.34 -0.4
27,071 + RS_RS17300 0.34 +1.2
27,072 - RS_RS17300 0.35 -3.2
27,072 - RS_RS17300 0.35 -1.1
27,072 - RS_RS17300 0.35 +0.2
27,072 - RS_RS17300 0.35 +1.2
27,127 + RS_RS17300 0.42 -0.9
27,127 + RS_RS17300 0.42 +0.0
27,127 + RS_RS17300 0.42 +1.2
27,128 - RS_RS17300 0.42 -0.0
27,128 - RS_RS17300 0.42 -1.8
27,128 - RS_RS17300 0.42 +0.3
27,128 - RS_RS17300 0.42 +1.2
27,128 - RS_RS17300 0.42 +1.2
27,128 - RS_RS17300 0.42 -0.4

Or see this region's nucleotide sequence