Experiment: Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS21385 and RS_RS21390 overlap by 4 nucleotides RS_RS21390 and RS_RS21395 are separated by 15 nucleotides RS_RS21395 and RS_RS21400 overlap by 4 nucleotides RS_RS21400 and RS_RS21405 overlap by 4 nucleotides
RS_RS21385: RS_RS21385 - oxidoreductase, at 1,125,564 to 1,126,430
_RS21385
RS_RS21390: RS_RS21390 - class II aldolase family protein, at 1,126,427 to 1,127,095
_RS21390
RS_RS21395: RS_RS21395 - 2-hydroxymuconic semialdehyde dehydrogenase, at 1,127,111 to 1,128,577
_RS21395
RS_RS21400: RS_RS21400 - 2-keto-4-pentenoate hydratase, at 1,128,574 to 1,129,371
_RS21400
RS_RS21405: RS_RS21405 - 4-oxalocrotonate decarboxylase, at 1,129,368 to 1,130,159
_RS21405
Position (kb) 1127
1128
1129 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1126.294 kb on - strand, within RS_RS21385 at 1126.344 kb on + strand at 1126.344 kb on + strand at 1126.380 kb on + strand at 1126.427 kb on - strand at 1126.656 kb on - strand, within RS_RS21390 at 1126.932 kb on - strand, within RS_RS21390 at 1127.186 kb on - strand at 1127.315 kb on + strand, within RS_RS21395 at 1127.315 kb on + strand, within RS_RS21395 at 1127.315 kb on + strand, within RS_RS21395 at 1127.413 kb on + strand, within RS_RS21395 at 1127.519 kb on + strand, within RS_RS21395 at 1127.520 kb on - strand, within RS_RS21395 at 1127.624 kb on - strand, within RS_RS21395 at 1127.624 kb on - strand, within RS_RS21395 at 1127.714 kb on + strand, within RS_RS21395 at 1127.715 kb on - strand, within RS_RS21395 at 1127.715 kb on - strand, within RS_RS21395 at 1127.715 kb on - strand, within RS_RS21395 at 1127.987 kb on + strand, within RS_RS21395 at 1127.987 kb on + strand, within RS_RS21395 at 1127.988 kb on - strand, within RS_RS21395 at 1128.132 kb on - strand, within RS_RS21395 at 1128.132 kb on - strand, within RS_RS21395 at 1128.132 kb on - strand, within RS_RS21395 at 1128.371 kb on + strand, within RS_RS21395 at 1128.371 kb on + strand, within RS_RS21395 at 1128.373 kb on + strand, within RS_RS21395 at 1128.374 kb on - strand, within RS_RS21395 at 1128.530 kb on + strand at 1128.662 kb on - strand, within RS_RS21400 at 1129.476 kb on + strand, within RS_RS21405 at 1129.477 kb on - strand, within RS_RS21405
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 1,126,294 - RS_RS21385 0.84 -0.4 1,126,344 + +1.4 1,126,344 + -0.7 1,126,380 + -1.1 1,126,427 - +0.9 1,126,656 - RS_RS21390 0.34 -2.4 1,126,932 - RS_RS21390 0.75 -0.9 1,127,186 - +0.2 1,127,315 + RS_RS21395 0.14 +0.9 1,127,315 + RS_RS21395 0.14 -1.6 1,127,315 + RS_RS21395 0.14 +0.9 1,127,413 + RS_RS21395 0.21 +0.1 1,127,519 + RS_RS21395 0.28 +0.3 1,127,520 - RS_RS21395 0.28 +0.9 1,127,624 - RS_RS21395 0.35 -0.3 1,127,624 - RS_RS21395 0.35 +1.9 1,127,714 + RS_RS21395 0.41 +0.9 1,127,715 - RS_RS21395 0.41 -0.2 1,127,715 - RS_RS21395 0.41 +0.9 1,127,715 - RS_RS21395 0.41 +1.2 1,127,987 + RS_RS21395 0.60 +0.9 1,127,987 + RS_RS21395 0.60 -0.6 1,127,988 - RS_RS21395 0.60 +0.4 1,128,132 - RS_RS21395 0.70 -0.7 1,128,132 - RS_RS21395 0.70 -0.1 1,128,132 - RS_RS21395 0.70 +1.1 1,128,371 + RS_RS21395 0.86 +0.7 1,128,371 + RS_RS21395 0.86 -1.1 1,128,373 + RS_RS21395 0.86 -1.1 1,128,374 - RS_RS21395 0.86 -0.7 1,128,530 + +2.2 1,128,662 - RS_RS21400 0.11 +2.2 1,129,476 + RS_RS21405 0.14 +0.5 1,129,477 - RS_RS21405 0.14 +0.1
Or see this region's nucleotide sequence