Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS20115

Experiment: Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS20110 and RS_RS20115 overlap by 4 nucleotidesRS_RS20115 and RS_RS20120 overlap by 4 nucleotidesRS_RS20120 and RS_RS20125 overlap by 4 nucleotides RS_RS20110: RS_RS20110 - VWA domain-containing protein, at 757,422 to 759,335 _RS20110 RS_RS20115: RS_RS20115 - cobaltochelatase, at 759,332 to 763,471 _RS20115 RS_RS20120: RS_RS20120 - ferredoxin protein, at 763,468 to 763,797 _RS20120 RS_RS20125: RS_RS20125 - HoxN/HupN/NixA family nickel/cobalt transporter, at 763,794 to 764,867 _RS20125 Position (kb) 759 760 761 762 763 764Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 758.341 kb on - strand, within RS_RS20110at 758.930 kb on + strand, within RS_RS20110at 758.930 kb on + strand, within RS_RS20110at 758.931 kb on - strand, within RS_RS20110at 758.932 kb on + strand, within RS_RS20110at 758.932 kb on + strand, within RS_RS20110at 758.932 kb on + strand, within RS_RS20110at 758.933 kb on - strand, within RS_RS20110at 758.933 kb on - strand, within RS_RS20110at 758.933 kb on - strand, within RS_RS20110at 758.933 kb on - strand, within RS_RS20110at 758.933 kb on - strand, within RS_RS20110at 758.933 kb on - strand, within RS_RS20110at 758.933 kb on - strand, within RS_RS20110at 758.933 kb on - strand, within RS_RS20110at 758.933 kb on - strand, within RS_RS20110at 758.933 kb on - strand, within RS_RS20110at 758.933 kb on - strand, within RS_RS20110at 758.933 kb on - strand, within RS_RS20110at 759.531 kb on + strandat 759.531 kb on + strandat 759.532 kb on - strandat 759.532 kb on - strandat 759.552 kb on + strandat 759.552 kb on + strandat 759.552 kb on + strandat 759.553 kb on - strandat 759.553 kb on - strandat 759.600 kb on + strandat 759.600 kb on + strandat 759.601 kb on - strandat 759.601 kb on - strandat 759.636 kb on + strandat 759.636 kb on + strandat 759.637 kb on - strandat 759.637 kb on - strandat 759.637 kb on - strandat 759.816 kb on + strand, within RS_RS20115at 759.816 kb on + strand, within RS_RS20115at 759.826 kb on - strand, within RS_RS20115at 759.826 kb on - strand, within RS_RS20115at 759.969 kb on + strand, within RS_RS20115at 759.969 kb on + strand, within RS_RS20115at 759.969 kb on + strand, within RS_RS20115at 759.970 kb on - strand, within RS_RS20115at 759.970 kb on - strand, within RS_RS20115at 759.970 kb on - strand, within RS_RS20115at 759.970 kb on - strand, within RS_RS20115at 760.038 kb on + strand, within RS_RS20115at 760.069 kb on - strand, within RS_RS20115at 760.137 kb on + strand, within RS_RS20115at 760.138 kb on - strand, within RS_RS20115at 760.542 kb on + strand, within RS_RS20115at 760.543 kb on - strand, within RS_RS20115at 760.543 kb on - strand, within RS_RS20115at 761.101 kb on - strand, within RS_RS20115at 761.379 kb on + strand, within RS_RS20115at 761.380 kb on - strand, within RS_RS20115at 761.607 kb on + strand, within RS_RS20115at 761.607 kb on + strand, within RS_RS20115at 761.607 kb on + strand, within RS_RS20115at 761.610 kb on + strand, within RS_RS20115at 761.649 kb on + strand, within RS_RS20115at 761.649 kb on + strand, within RS_RS20115at 761.649 kb on + strand, within RS_RS20115at 761.650 kb on - strand, within RS_RS20115at 761.650 kb on - strand, within RS_RS20115at 761.754 kb on + strand, within RS_RS20115at 761.754 kb on + strand, within RS_RS20115at 761.755 kb on - strand, within RS_RS20115at 761.908 kb on - strand, within RS_RS20115at 761.908 kb on - strand, within RS_RS20115at 761.908 kb on - strand, within RS_RS20115at 761.908 kb on - strand, within RS_RS20115at 761.910 kb on + strand, within RS_RS20115at 761.910 kb on + strand, within RS_RS20115at 761.911 kb on - strand, within RS_RS20115at 761.911 kb on - strand, within RS_RS20115at 761.943 kb on + strand, within RS_RS20115at 761.944 kb on - strand, within RS_RS20115at 762.045 kb on + strand, within RS_RS20115at 762.045 kb on + strand, within RS_RS20115at 762.045 kb on + strand, within RS_RS20115at 762.046 kb on - strand, within RS_RS20115at 762.046 kb on - strand, within RS_RS20115at 762.046 kb on - strand, within RS_RS20115at 762.126 kb on + strand, within RS_RS20115at 762.126 kb on + strand, within RS_RS20115at 762.127 kb on - strand, within RS_RS20115at 762.180 kb on + strand, within RS_RS20115at 762.180 kb on + strand, within RS_RS20115at 762.181 kb on - strand, within RS_RS20115at 762.181 kb on - strand, within RS_RS20115at 762.181 kb on - strand, within RS_RS20115at 762.192 kb on + strand, within RS_RS20115at 762.812 kb on - strand, within RS_RS20115at 762.813 kb on + strand, within RS_RS20115at 762.813 kb on + strand, within RS_RS20115at 762.814 kb on - strand, within RS_RS20115at 762.814 kb on - strand, within RS_RS20115at 762.903 kb on + strand, within RS_RS20115at 762.990 kb on + strand, within RS_RS20115at 762.990 kb on + strand, within RS_RS20115at 762.990 kb on + strand, within RS_RS20115at 762.991 kb on - strand, within RS_RS20115at 762.991 kb on - strand, within RS_RS20115at 762.991 kb on - strand, within RS_RS20115at 763.108 kb on - strandat 763.460 kb on + strandat 763.596 kb on - strand, within RS_RS20120at 763.614 kb on - strand, within RS_RS20120at 763.852 kb on + strandat 763.852 kb on + strandat 763.853 kb on - strandat 763.903 kb on + strand, within RS_RS20125at 763.904 kb on - strand, within RS_RS20125at 763.904 kb on - strand, within RS_RS20125at 764.053 kb on + strand, within RS_RS20125at 764.053 kb on + strand, within RS_RS20125at 764.054 kb on - strand, within RS_RS20125at 764.093 kb on - strand, within RS_RS20125

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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758,341 - RS_RS20110 0.48 -1.0
758,930 + RS_RS20110 0.79 +1.0
758,930 + RS_RS20110 0.79 -0.9
758,931 - RS_RS20110 0.79 -0.8
758,932 + RS_RS20110 0.79 +1.0
758,932 + RS_RS20110 0.79 -2.0
758,932 + RS_RS20110 0.79 -0.2
758,933 - RS_RS20110 0.79 -0.5
758,933 - RS_RS20110 0.79 +0.5
758,933 - RS_RS20110 0.79 -1.0
758,933 - RS_RS20110 0.79 -0.7
758,933 - RS_RS20110 0.79 -1.7
758,933 - RS_RS20110 0.79 -2.3
758,933 - RS_RS20110 0.79 +0.0
758,933 - RS_RS20110 0.79 -0.1
758,933 - RS_RS20110 0.79 -0.5
758,933 - RS_RS20110 0.79 +1.0
758,933 - RS_RS20110 0.79 +1.0
758,933 - RS_RS20110 0.79 +1.0
759,531 + -0.6
759,531 + -0.9
759,532 - +0.0
759,532 - +1.0
759,552 + +1.0
759,552 + -0.6
759,552 + -0.4
759,553 - +1.4
759,553 - -1.0
759,600 + +1.0
759,600 + +0.2
759,601 - -2.3
759,601 - +0.8
759,636 + -1.0
759,636 + +1.0
759,637 - +0.0
759,637 - -2.0
759,637 - +0.0
759,816 + RS_RS20115 0.12 -1.4
759,816 + RS_RS20115 0.12 -0.5
759,826 - RS_RS20115 0.12 -2.1
759,826 - RS_RS20115 0.12 +1.0
759,969 + RS_RS20115 0.15 +0.4
759,969 + RS_RS20115 0.15 -0.7
759,969 + RS_RS20115 0.15 -0.2
759,970 - RS_RS20115 0.15 -1.4
759,970 - RS_RS20115 0.15 -0.9
759,970 - RS_RS20115 0.15 -0.6
759,970 - RS_RS20115 0.15 -0.1
760,038 + RS_RS20115 0.17 +3.6
760,069 - RS_RS20115 0.18 -2.0
760,137 + RS_RS20115 0.19 +1.0
760,138 - RS_RS20115 0.19 +1.0
760,542 + RS_RS20115 0.29 +1.0
760,543 - RS_RS20115 0.29 -1.1
760,543 - RS_RS20115 0.29 -2.3
761,101 - RS_RS20115 0.43 +1.0
761,379 + RS_RS20115 0.49 -1.2
761,380 - RS_RS20115 0.49 +2.3
761,607 + RS_RS20115 0.55 -1.9
761,607 + RS_RS20115 0.55 -3.0
761,607 + RS_RS20115 0.55 -0.9
761,610 + RS_RS20115 0.55 -0.2
761,649 + RS_RS20115 0.56 +1.0
761,649 + RS_RS20115 0.56 +0.0
761,649 + RS_RS20115 0.56 +1.0
761,650 - RS_RS20115 0.56 +1.0
761,650 - RS_RS20115 0.56 +3.0
761,754 + RS_RS20115 0.59 -0.6
761,754 + RS_RS20115 0.59 -1.3
761,755 - RS_RS20115 0.59 -1.0
761,908 - RS_RS20115 0.62 +1.0
761,908 - RS_RS20115 0.62 +1.0
761,908 - RS_RS20115 0.62 +0.3
761,908 - RS_RS20115 0.62 -0.3
761,910 + RS_RS20115 0.62 -1.1
761,910 + RS_RS20115 0.62 -0.8
761,911 - RS_RS20115 0.62 -1.6
761,911 - RS_RS20115 0.62 +1.0
761,943 + RS_RS20115 0.63 -0.1
761,944 - RS_RS20115 0.63 -0.7
762,045 + RS_RS20115 0.66 +1.0
762,045 + RS_RS20115 0.66 +0.0
762,045 + RS_RS20115 0.66 -0.1
762,046 - RS_RS20115 0.66 -1.2
762,046 - RS_RS20115 0.66 -0.1
762,046 - RS_RS20115 0.66 -1.0
762,126 + RS_RS20115 0.67 -0.3
762,126 + RS_RS20115 0.67 -0.6
762,127 - RS_RS20115 0.68 -1.2
762,180 + RS_RS20115 0.69 -0.1
762,180 + RS_RS20115 0.69 -1.4
762,181 - RS_RS20115 0.69 -0.4
762,181 - RS_RS20115 0.69 +1.0
762,181 - RS_RS20115 0.69 +1.0
762,192 + RS_RS20115 0.69 -0.8
762,812 - RS_RS20115 0.84 -0.8
762,813 + RS_RS20115 0.84 -3.9
762,813 + RS_RS20115 0.84 -0.7
762,814 - RS_RS20115 0.84 +0.1
762,814 - RS_RS20115 0.84 +1.0
762,903 + RS_RS20115 0.86 +1.0
762,990 + RS_RS20115 0.88 -3.1
762,990 + RS_RS20115 0.88 -3.1
762,990 + RS_RS20115 0.88 +1.0
762,991 - RS_RS20115 0.88 +1.6
762,991 - RS_RS20115 0.88 -1.8
762,991 - RS_RS20115 0.88 +1.0
763,108 - +0.2
763,460 + -0.3
763,596 - RS_RS20120 0.39 -1.7
763,614 - RS_RS20120 0.44 -0.9
763,852 + +1.0
763,852 + -0.5
763,853 - +0.4
763,903 + RS_RS20125 0.10 +0.7
763,904 - RS_RS20125 0.10 +1.0
763,904 - RS_RS20125 0.10 -0.2
764,053 + RS_RS20125 0.24 -1.2
764,053 + RS_RS20125 0.24 +1.0
764,054 - RS_RS20125 0.24 +0.4
764,093 - RS_RS20125 0.28 -0.8

Or see this region's nucleotide sequence