Experiment: Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS19670 and RS_RS19675 are separated by 134 nucleotides RS_RS19675 and RS_RS19680 overlap by 4 nucleotides
RS_RS19670: RS_RS19670 - J domain-containing protein, at 651,953 to 653,818
_RS19670
RS_RS19675: RS_RS19675 - DNA-binding response regulator, at 653,953 to 654,618
_RS19675
RS_RS19680: RS_RS19680 - two-component sensor histidine kinase, at 654,615 to 656,093
_RS19680
Position (kb) 653
654
655 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 653.136 kb on - strand, within RS_RS19670 at 653.195 kb on + strand, within RS_RS19670 at 653.196 kb on - strand, within RS_RS19670 at 653.196 kb on - strand, within RS_RS19670 at 653.196 kb on - strand, within RS_RS19670 at 653.309 kb on + strand, within RS_RS19670 at 653.309 kb on + strand, within RS_RS19670 at 653.310 kb on - strand, within RS_RS19670 at 653.345 kb on + strand, within RS_RS19670 at 653.345 kb on + strand, within RS_RS19670 at 653.345 kb on + strand, within RS_RS19670 at 653.346 kb on - strand, within RS_RS19670 at 653.346 kb on - strand, within RS_RS19670 at 653.346 kb on - strand, within RS_RS19670 at 653.420 kb on + strand, within RS_RS19670 at 653.621 kb on + strand, within RS_RS19670 at 653.621 kb on + strand, within RS_RS19670 at 653.621 kb on + strand, within RS_RS19670 at 653.621 kb on + strand, within RS_RS19670 at 653.621 kb on + strand, within RS_RS19670 at 653.621 kb on + strand, within RS_RS19670 at 653.621 kb on + strand, within RS_RS19670 at 653.621 kb on + strand, within RS_RS19670 at 653.621 kb on + strand, within RS_RS19670 at 653.621 kb on + strand, within RS_RS19670 at 653.621 kb on + strand, within RS_RS19670 at 653.622 kb on - strand, within RS_RS19670 at 653.622 kb on - strand, within RS_RS19670 at 653.622 kb on - strand, within RS_RS19670 at 653.622 kb on - strand, within RS_RS19670 at 653.622 kb on - strand, within RS_RS19670 at 653.622 kb on - strand, within RS_RS19670 at 653.622 kb on - strand, within RS_RS19670 at 653.622 kb on - strand, within RS_RS19670 at 653.657 kb on + strand at 653.658 kb on - strand at 653.658 kb on - strand at 653.819 kb on + strand at 653.825 kb on + strand at 653.826 kb on - strand at 653.826 kb on - strand at 653.828 kb on - strand at 653.828 kb on - strand at 653.830 kb on - strand at 653.855 kb on - strand at 653.859 kb on - strand at 653.884 kb on + strand at 653.889 kb on + strand at 653.898 kb on - strand at 653.898 kb on - strand at 653.898 kb on - strand at 653.935 kb on + strand at 654.029 kb on - strand, within RS_RS19675 at 654.029 kb on - strand, within RS_RS19675 at 654.418 kb on + strand, within RS_RS19675 at 654.419 kb on - strand, within RS_RS19675 at 654.595 kb on + strand at 654.596 kb on - strand at 654.596 kb on - strand at 654.596 kb on - strand at 654.669 kb on + strand at 654.669 kb on + strand at 654.669 kb on + strand at 654.670 kb on - strand at 654.670 kb on - strand at 654.670 kb on - strand at 654.670 kb on - strand at 654.670 kb on - strand at 654.792 kb on + strand, within RS_RS19680 at 654.792 kb on + strand, within RS_RS19680 at 654.793 kb on - strand, within RS_RS19680 at 654.793 kb on - strand, within RS_RS19680 at 654.912 kb on + strand, within RS_RS19680 at 654.913 kb on - strand, within RS_RS19680 at 655.416 kb on + strand, within RS_RS19680 at 655.416 kb on + strand, within RS_RS19680 at 655.416 kb on + strand, within RS_RS19680
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 653,136 - RS_RS19670 0.63 -0.4 653,195 + RS_RS19670 0.67 +1.0 653,196 - RS_RS19670 0.67 +0.4 653,196 - RS_RS19670 0.67 -0.5 653,196 - RS_RS19670 0.67 -0.0 653,309 + RS_RS19670 0.73 +0.0 653,309 + RS_RS19670 0.73 +1.0 653,310 - RS_RS19670 0.73 +0.5 653,345 + RS_RS19670 0.75 -0.9 653,345 + RS_RS19670 0.75 -0.5 653,345 + RS_RS19670 0.75 +1.6 653,346 - RS_RS19670 0.75 -0.4 653,346 - RS_RS19670 0.75 +0.3 653,346 - RS_RS19670 0.75 -0.8 653,420 + RS_RS19670 0.79 +0.7 653,621 + RS_RS19670 0.89 -3.2 653,621 + RS_RS19670 0.89 -2.5 653,621 + RS_RS19670 0.89 -0.0 653,621 + RS_RS19670 0.89 -0.2 653,621 + RS_RS19670 0.89 +0.1 653,621 + RS_RS19670 0.89 +1.0 653,621 + RS_RS19670 0.89 +0.0 653,621 + RS_RS19670 0.89 -0.5 653,621 + RS_RS19670 0.89 +1.0 653,621 + RS_RS19670 0.89 -0.8 653,621 + RS_RS19670 0.89 -0.2 653,622 - RS_RS19670 0.89 -1.8 653,622 - RS_RS19670 0.89 +1.5 653,622 - RS_RS19670 0.89 -1.2 653,622 - RS_RS19670 0.89 -1.0 653,622 - RS_RS19670 0.89 -0.8 653,622 - RS_RS19670 0.89 +1.2 653,622 - RS_RS19670 0.89 +1.0 653,622 - RS_RS19670 0.89 -1.5 653,657 + +0.0 653,658 - -1.3 653,658 - -2.0 653,819 + +1.0 653,825 + -0.4 653,826 - +0.0 653,826 - -3.0 653,828 - +1.0 653,828 - +0.5 653,830 - +0.6 653,855 - +0.3 653,859 - +0.6 653,884 + -1.0 653,889 + -1.3 653,898 - +1.5 653,898 - +0.0 653,898 - +1.0 653,935 + +1.0 654,029 - RS_RS19675 0.11 -1.0 654,029 - RS_RS19675 0.11 +1.0 654,418 + RS_RS19675 0.70 +1.4 654,419 - RS_RS19675 0.70 -0.5 654,595 + +1.1 654,596 - +2.8 654,596 - -1.0 654,596 - +1.0 654,669 + +0.4 654,669 + +1.0 654,669 + +1.0 654,670 - -1.5 654,670 - +2.6 654,670 - +1.0 654,670 - +0.9 654,670 - +0.5 654,792 + RS_RS19680 0.12 +2.1 654,792 + RS_RS19680 0.12 +3.9 654,793 - RS_RS19680 0.12 +1.0 654,793 - RS_RS19680 0.12 +1.0 654,912 + RS_RS19680 0.20 +1.0 654,913 - RS_RS19680 0.20 +1.0 655,416 + RS_RS19680 0.54 -0.3 655,416 + RS_RS19680 0.54 +0.0 655,416 + RS_RS19680 0.54 +0.5
Or see this region's nucleotide sequence