Experiment: Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS19660 and RS_RS19665 are separated by 165 nucleotides RS_RS19665 and RS_RS19670 are separated by 10 nucleotides
RS_RS19660: RS_RS19660 - divalent metal cation transporter, at 648,667 to 649,995
_RS19660
RS_RS19665: RS_RS19665 - molecular chaperone HscC, at 650,161 to 651,942
_RS19665
RS_RS19670: RS_RS19670 - J domain-containing protein, at 651,953 to 653,818
_RS19670
Position (kb) 650
651
652 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 649.295 kb on + strand, within RS_RS19660 at 649.295 kb on + strand, within RS_RS19660 at 649.296 kb on - strand, within RS_RS19660 at 649.296 kb on - strand, within RS_RS19660 at 649.296 kb on - strand, within RS_RS19660 at 649.296 kb on - strand, within RS_RS19660 at 649.296 kb on - strand, within RS_RS19660 at 649.343 kb on + strand, within RS_RS19660 at 649.344 kb on - strand, within RS_RS19660 at 649.439 kb on + strand, within RS_RS19660 at 649.439 kb on + strand, within RS_RS19660 at 649.439 kb on + strand, within RS_RS19660 at 649.439 kb on + strand, within RS_RS19660 at 649.439 kb on + strand, within RS_RS19660 at 649.440 kb on - strand, within RS_RS19660 at 649.847 kb on + strand, within RS_RS19660 at 649.847 kb on + strand, within RS_RS19660 at 649.847 kb on + strand, within RS_RS19660 at 649.847 kb on + strand, within RS_RS19660 at 649.847 kb on + strand, within RS_RS19660 at 649.848 kb on - strand, within RS_RS19660 at 650.434 kb on + strand, within RS_RS19665 at 650.435 kb on - strand, within RS_RS19665 at 650.435 kb on - strand, within RS_RS19665 at 650.435 kb on - strand, within RS_RS19665 at 650.435 kb on - strand, within RS_RS19665 at 650.504 kb on + strand, within RS_RS19665 at 650.581 kb on + strand, within RS_RS19665 at 651.189 kb on + strand, within RS_RS19665 at 651.189 kb on + strand, within RS_RS19665 at 651.190 kb on - strand, within RS_RS19665 at 651.190 kb on - strand, within RS_RS19665 at 651.190 kb on - strand, within RS_RS19665 at 651.190 kb on - strand, within RS_RS19665 at 651.586 kb on + strand, within RS_RS19665 at 651.587 kb on - strand, within RS_RS19665 at 652.031 kb on + strand at 652.032 kb on - strand at 652.100 kb on + strand at 652.101 kb on - strand at 652.101 kb on - strand at 652.101 kb on - strand at 652.101 kb on - strand at 652.101 kb on - strand at 652.266 kb on - strand, within RS_RS19670 at 652.661 kb on + strand, within RS_RS19670 at 652.662 kb on - strand, within RS_RS19670 at 652.662 kb on - strand, within RS_RS19670 at 652.763 kb on + strand, within RS_RS19670 at 652.763 kb on + strand, within RS_RS19670 at 652.764 kb on - strand, within RS_RS19670
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 649,295 + RS_RS19660 0.47 +0.2 649,295 + RS_RS19660 0.47 -0.2 649,296 - RS_RS19660 0.47 -1.8 649,296 - RS_RS19660 0.47 -2.4 649,296 - RS_RS19660 0.47 -0.3 649,296 - RS_RS19660 0.47 +1.0 649,296 - RS_RS19660 0.47 -0.7 649,343 + RS_RS19660 0.51 -2.1 649,344 - RS_RS19660 0.51 +0.8 649,439 + RS_RS19660 0.58 -0.6 649,439 + RS_RS19660 0.58 -0.8 649,439 + RS_RS19660 0.58 -0.4 649,439 + RS_RS19660 0.58 -1.0 649,439 + RS_RS19660 0.58 -1.6 649,440 - RS_RS19660 0.58 +1.0 649,847 + RS_RS19660 0.89 +1.0 649,847 + RS_RS19660 0.89 -2.0 649,847 + RS_RS19660 0.89 +0.3 649,847 + RS_RS19660 0.89 +1.0 649,847 + RS_RS19660 0.89 +0.4 649,848 - RS_RS19660 0.89 +1.0 650,434 + RS_RS19665 0.15 +0.1 650,435 - RS_RS19665 0.15 -0.8 650,435 - RS_RS19665 0.15 +1.0 650,435 - RS_RS19665 0.15 -1.2 650,435 - RS_RS19665 0.15 -1.0 650,504 + RS_RS19665 0.19 +0.2 650,581 + RS_RS19665 0.24 -0.2 651,189 + RS_RS19665 0.58 -0.5 651,189 + RS_RS19665 0.58 +0.0 651,190 - RS_RS19665 0.58 +1.0 651,190 - RS_RS19665 0.58 -0.5 651,190 - RS_RS19665 0.58 +1.0 651,190 - RS_RS19665 0.58 +1.0 651,586 + RS_RS19665 0.80 -2.2 651,587 - RS_RS19665 0.80 +1.0 652,031 + -1.0 652,032 - +0.4 652,100 + +1.0 652,101 - +1.3 652,101 - -0.5 652,101 - +2.4 652,101 - +1.0 652,101 - -0.6 652,266 - RS_RS19670 0.17 +1.0 652,661 + RS_RS19670 0.38 -0.7 652,662 - RS_RS19670 0.38 +1.0 652,662 - RS_RS19670 0.38 -2.8 652,763 + RS_RS19670 0.43 +0.0 652,763 + RS_RS19670 0.43 -2.0 652,764 - RS_RS19670 0.43 -1.4
Or see this region's nucleotide sequence