Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS18915

Experiment: Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS18910 and RS_RS18915 are separated by 10 nucleotidesRS_RS18915 and RS_RS18920 overlap by 4 nucleotides RS_RS18910: RS_RS18910 - histidine ammonia-lyase, at 470,716 to 472,284 _RS18910 RS_RS18915: RS_RS18915 - acyltransferase, at 472,295 to 474,004 _RS18915 RS_RS18920: RS_RS18920 - AMP-dependent synthetase, at 474,001 to 475,692 _RS18920 Position (kb) 472 473 474 475Strain fitness (log2 ratio) -2 -1 0 1 2at 471.327 kb on + strand, within RS_RS18910at 471.426 kb on - strand, within RS_RS18910at 471.626 kb on + strand, within RS_RS18910at 471.627 kb on - strand, within RS_RS18910at 471.727 kb on + strand, within RS_RS18910at 471.727 kb on + strand, within RS_RS18910at 471.727 kb on + strand, within RS_RS18910at 471.728 kb on - strand, within RS_RS18910at 471.728 kb on - strand, within RS_RS18910at 471.728 kb on - strand, within RS_RS18910at 471.728 kb on - strand, within RS_RS18910at 471.798 kb on - strand, within RS_RS18910at 471.798 kb on - strand, within RS_RS18910at 471.900 kb on + strand, within RS_RS18910at 471.900 kb on + strand, within RS_RS18910at 471.901 kb on - strand, within RS_RS18910at 471.901 kb on - strand, within RS_RS18910at 471.901 kb on - strand, within RS_RS18910at 471.901 kb on - strand, within RS_RS18910at 471.901 kb on - strand, within RS_RS18910at 471.903 kb on - strand, within RS_RS18910at 471.903 kb on - strand, within RS_RS18910at 472.091 kb on + strand, within RS_RS18910at 472.092 kb on - strand, within RS_RS18910at 472.092 kb on - strand, within RS_RS18910at 472.470 kb on + strand, within RS_RS18915at 472.470 kb on + strand, within RS_RS18915at 472.479 kb on + strand, within RS_RS18915at 472.480 kb on - strand, within RS_RS18915at 472.545 kb on + strand, within RS_RS18915at 472.545 kb on + strand, within RS_RS18915at 472.546 kb on - strand, within RS_RS18915at 472.779 kb on + strand, within RS_RS18915at 473.067 kb on + strand, within RS_RS18915at 473.068 kb on - strand, within RS_RS18915at 473.068 kb on - strand, within RS_RS18915at 473.113 kb on - strand, within RS_RS18915at 473.361 kb on - strand, within RS_RS18915at 473.361 kb on - strand, within RS_RS18915at 473.361 kb on - strand, within RS_RS18915at 473.392 kb on - strand, within RS_RS18915at 473.392 kb on - strand, within RS_RS18915at 473.523 kb on + strand, within RS_RS18915at 473.607 kb on + strand, within RS_RS18915at 473.608 kb on - strand, within RS_RS18915at 473.637 kb on + strand, within RS_RS18915at 473.638 kb on - strand, within RS_RS18915at 473.968 kb on + strandat 473.970 kb on + strandat 473.970 kb on + strandat 473.970 kb on + strandat 473.970 kb on + strandat 473.971 kb on - strandat 473.971 kb on - strandat 473.971 kb on - strandat 473.971 kb on - strandat 474.071 kb on - strandat 474.297 kb on - strand, within RS_RS18920at 474.297 kb on - strand, within RS_RS18920at 474.459 kb on - strand, within RS_RS18920at 474.608 kb on + strand, within RS_RS18920at 474.608 kb on + strand, within RS_RS18920at 474.609 kb on - strand, within RS_RS18920at 474.887 kb on + strand, within RS_RS18920at 474.888 kb on - strand, within RS_RS18920at 474.888 kb on - strand, within RS_RS18920

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
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471,327 + RS_RS18910 0.39 +0.8
471,426 - RS_RS18910 0.45 -0.6
471,626 + RS_RS18910 0.58 -1.5
471,627 - RS_RS18910 0.58 +2.7
471,727 + RS_RS18910 0.64 -0.1
471,727 + RS_RS18910 0.64 -0.8
471,727 + RS_RS18910 0.64 -0.5
471,728 - RS_RS18910 0.64 +0.6
471,728 - RS_RS18910 0.64 +0.1
471,728 - RS_RS18910 0.64 -2.0
471,728 - RS_RS18910 0.64 -0.7
471,798 - RS_RS18910 0.69 -0.9
471,798 - RS_RS18910 0.69 +1.1
471,900 + RS_RS18910 0.75 +0.1
471,900 + RS_RS18910 0.75 +0.3
471,901 - RS_RS18910 0.76 +1.1
471,901 - RS_RS18910 0.76 -0.3
471,901 - RS_RS18910 0.76 -1.2
471,901 - RS_RS18910 0.76 +1.1
471,901 - RS_RS18910 0.76 -1.0
471,903 - RS_RS18910 0.76 +0.2
471,903 - RS_RS18910 0.76 +1.1
472,091 + RS_RS18910 0.88 -0.3
472,092 - RS_RS18910 0.88 -0.5
472,092 - RS_RS18910 0.88 +0.3
472,470 + RS_RS18915 0.10 -0.4
472,470 + RS_RS18915 0.10 +1.1
472,479 + RS_RS18915 0.11 +0.4
472,480 - RS_RS18915 0.11 +0.1
472,545 + RS_RS18915 0.15 +0.6
472,545 + RS_RS18915 0.15 +2.1
472,546 - RS_RS18915 0.15 +1.1
472,779 + RS_RS18915 0.28 +1.9
473,067 + RS_RS18915 0.45 -2.5
473,068 - RS_RS18915 0.45 -0.6
473,068 - RS_RS18915 0.45 -1.3
473,113 - RS_RS18915 0.48 +1.1
473,361 - RS_RS18915 0.62 +1.1
473,361 - RS_RS18915 0.62 -0.5
473,361 - RS_RS18915 0.62 +1.1
473,392 - RS_RS18915 0.64 -0.3
473,392 - RS_RS18915 0.64 +1.5
473,523 + RS_RS18915 0.72 +1.1
473,607 + RS_RS18915 0.77 -0.1
473,608 - RS_RS18915 0.77 -0.9
473,637 + RS_RS18915 0.78 +0.7
473,638 - RS_RS18915 0.79 -2.6
473,968 + -0.5
473,970 + -1.2
473,970 + -0.1
473,970 + +1.1
473,970 + +0.7
473,971 - +0.1
473,971 - -0.5
473,971 - +1.1
473,971 - -1.4
474,071 - -0.8
474,297 - RS_RS18920 0.17 +1.1
474,297 - RS_RS18920 0.17 -1.2
474,459 - RS_RS18920 0.27 -0.4
474,608 + RS_RS18920 0.36 -0.7
474,608 + RS_RS18920 0.36 +1.1
474,609 - RS_RS18920 0.36 +0.1
474,887 + RS_RS18920 0.52 +0.8
474,888 - RS_RS18920 0.52 +0.6
474,888 - RS_RS18920 0.52 -0.9

Or see this region's nucleotide sequence